XLOC_002992 (taar20j)


Basic Information

Item Value
gene id XLOC_002992
gene name taar20j
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40415062 ~ 40416084 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005506
AACAAACTCCTAACAGGAGGAGACTCACTCATGGCCTATGAGACAGAGCATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTATCAAGGAGAGACGCTCCAGTCATGGATATATCATCATCTATGTGTTTGTGTCATTGCTGTCAGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctcACACTTCAAGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTGACTGATCTGCTTATTGGACTCGTCATGCCTGTAGAGGCCATCAGACTGATTGACAAGTGTTGGTATTTTGGAAACACTTTCTGTGGACTCTATATGTTATTTGTGTCATTACTTGTCACAGTATCTCTtggtaatttagttttaattgctGTTGATCGTTATGTGGCTGTGTGTCACCCTCTACTGTACCCACAGAGAATAACCATCACCAAAACATTAGTGAGTATCTGTCTGAACTGGGTTTGCTTCTCGGCATATTGCACTGCCCTTATAATTAACAATAGTTTCTTTGACACTCAGACTGATGTGTGTTACGGGCAGTGTTTAGTCATGGTAAGTTTTGGCTGGATAGCAACTGATCTGTTCATATCTTTTATTTTTCCTTGTTTGCTGATCATCTCTTTATATTTGAGGATTTTCTATGTCGTTCATCAGCAAGTGAAGGTTATAAACTCTCTGATGAAGGGTGGTAAATGTGTAACGGAGGGTTCAGTGAAGAGGAAATCTGAGAGTAAAGCTGCTCTGACTTTAGGAATCATTGTGTCTGTTTTTCTGCTTTGCTATATCCCATATTATATCTGTTCTCTAACTGTAAACTCTTCCACAGCTTTGAATGTTTTAGTATGGGTTTTGTATGCTAATTCAGGTCTGAATCCTCtggtttatgctttattttactcCTGGTTTAAGAAGACAGCTAAACTCATTATAACTCTGAAAATACTTCATCCGGCATCCTCTCTGATCAATTTTGTTTCACAACATTAA

Function

symbol description
taar20j Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0007198 adenylate cyclase-inhibiting serotonin receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007165 signal transduction biological_process
GO:0030425 dendrite cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function
GO:0051378 serotonin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060414-15 Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000096086

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005506 True 1023 mRNA 0.39 1 40415062 40416084

Neighbor

gene id symbol gene type direction distance location
XLOC_002991 taar20n coding downstream 4178 40409832 ~ 40410884 (-)
XLOC_002990 taar20i coding downstream 8748 40405283 ~ 40406314 (-)
XLOC_002989 AL953903.3 coding downstream 10731 40403994 ~ 40404331 (-)
XLOC_002988 taar20t coding downstream 12158 40401858 ~ 40402904 (-)
XLOC_002987 taar20o coding downstream 17699 40396302 ~ 40397363 (-)
XLOC_002993 BX530037.4 coding upstream 2723 40418807 ~ 40419059 (-)
XLOC_002994 taar20w coding upstream 3968 40420052 ~ 40421059 (-)
XLOC_002995 taar20r coding upstream 12611 40428695 ~ 40429747 (-)
XLOC_002996 taar20q coding upstream 26610 40442694 ~ 40443746 (-)
XLOC_002997 taar20p coding upstream 31624 40447708 ~ 40448760 (-)
XLOC_002985 AL953903.1 non-coding downstream 30630 40383782 ~ 40384432 (-)
XLOC_002983 AL953903.2 non-coding downstream 39066 40375010 ~ 40375996 (-)
XLOC_002973 NA non-coding downstream 1324974 39087325 ~ 39090088 (-)
XLOC_002970 NA non-coding downstream 1750828 38663993 ~ 38664234 (-)
XLOC_003000 BX530037.2 non-coding upstream 52288 40468372 ~ 40469394 (-)
XLOC_003004 NA non-coding upstream 73553 40489637 ~ 40490637 (-)
XLOC_003005 NA non-coding upstream 82075 40498159 ~ 40499209 (-)
XLOC_003009 BX530037.3 non-coding upstream 100665 40516749 ~ 40517598 (-)

Expression


Co-expression Network