RNA id: TCONS_00005496


Basic Information

Item Value
RNA id TCONS_00005496
length 1056
RNA type mRNA
GC content 0.38
exon number 1
gene id XLOC_002979
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40331191 ~ 40366397 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgaaaagacagaaaggagagcagaacaaactcctaACAGGAGGAGACTCACTCATGCCCTACGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTAACATCAACTCATCATGCGTCAAGGAACAACGCTCCAGTCATGGATATATCatcatatatgtgtttgtgtcattgctgtcagcatggactgtgtttctgaacctgctggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTAAATGATCTGCTTATTGGACTCGCCATGCCTATGGAGGCCATCAGAATGATTCAGACATGTTGGTATTTTGGAGACACTTTCTGTggaatttatatattatttgtgtcaATACTTCTCGCAGCATCTCTTggtaatttacttttaattgctGTTGATCGTTATGTGGCTGTTTGTCACCCTTTATTTTACCCACGGAAAACAACAATggctaaaatattaataactatCTGTCTGAATTTTGCTTGTTTATCAGCATATAACACTGCCTTTGTAATTAATAATGGATATTTTGACACTTCACACAGAACAGATGTGTGTTATGGACAGTGTTCAGTCATGATACGTTTTAGCTGGATAGTCACTGATCTGTTCATGTCTTTTATTTTTCCTTGCACTCTGATCATGATGTTTTATTTGAGGATTTTCTATGTGGTTCATCAGCAAGTGAAGGTTATAAACTCTCTGATGAAGGGTGGTAAATGTGTAACGGAGGGTTCAGGGAAGAGGAAATCTGAGAGTAAAGCTGCTCTGACTTTAGGAATCATTGTGTCAGTGTATATGCTTTGCTGGATTCCATATTATATCTGTTCTCTAACTGTAAACTCTTACACagctataaatgttttaatatttggtGTACATGCTAGCTCTGGTCTGAATCCTCtggtttatgctttattttacccCTGGTTTAAAAAGACAGCTAAACTCATTTTAACTCTGATGATATTTCAGCCGGCGTCCTCTCTTATCAATGTTTTTACACATGAATTATAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060414-5 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000150415

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006122 lncRNA downstream 1275254 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005778 lncRNA downstream 1701108 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00005474 lncRNA downstream 1838632 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00006121 lncRNA downstream 1849811 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00006120 lncRNA downstream 1934247 38412930 ~ 38431095 (-) False XLOC_002967
TCONS_00005520 lncRNA upstream 123240 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00005521 lncRNA upstream 131762 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005779 lncRNA upstream 254584 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00006123 lncRNA upstream 484740 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 1001711 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00005495 mRNA downstream 4707 40359577 ~ 40360635 (-) True XLOC_002982
TCONS_00005494 mRNA downstream 13092 40351198 ~ 40352250 (-) True XLOC_002981
TCONS_00005493 mRNA downstream 17210 40347080 ~ 40348132 (-) True XLOC_002980
TCONS_00005492 mRNA downstream 26032 40338250 ~ 40339310 (-) False XLOC_002979
TCONS_00005490 mRNA downstream 32023 40332261 ~ 40333319 (-) False XLOC_002979
TCONS_00005498 mRNA upstream 12364 40378761 ~ 40380136 (-) True XLOC_002984
TCONS_00005500 mRNA upstream 20813 40387210 ~ 40388265 (-) True XLOC_002986
TCONS_00005501 mRNA upstream 29905 40396302 ~ 40397363 (-) True XLOC_002987
TCONS_00005502 mRNA upstream 35461 40401858 ~ 40402904 (-) True XLOC_002988
TCONS_00005504 mRNA upstream 38886 40405283 ~ 40406314 (-) True XLOC_002990
TCONS_00005472 other downstream 1930843 38434383 ~ 38434499 (-) True XLOC_002968
TCONS_00005468 other downstream 1989089 38376134 ~ 38376253 (-) True XLOC_002966
TCONS_00005467 other downstream 2049272 38290887 ~ 38316070 (-) False XLOC_002965
TCONS_00005463 other downstream 2290951 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005461 other downstream 2293174 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005497 other upstream 8613 40375010 ~ 40375996 (-) True XLOC_002983
TCONS_00005499 other upstream 17385 40383782 ~ 40384432 (-) True XLOC_002985
TCONS_00005503 other upstream 37597 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005507 other upstream 52410 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005514 other upstream 101975 40468372 ~ 40469394 (-) True XLOC_003000

Expression Profile

//