RNA id: TCONS_00005492


Basic Information

Item Value
RNA id TCONS_00005492
length 1061
RNA type mRNA
GC content 0.37
exon number 1
gene id XLOC_002979
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40331191 ~ 40366397 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATGAAAGAACAGAAAGGAGAGCAGAACAAACACCTAACAGGAGGAGACTCACTCATGGCCTATGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTTTGAAGGAAAATCGCTCAAGTGATGAATATAACATCATATATTTGCTTGTGTCATTGCTGTCAGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTAAATGATCTGCTTATAGGACTCGTCATGCCTATAGAGGCCTTTAGACTAATTGAGACGTGTTGGTACTTTGGAGACACTTTCTGTGGGCTCTATTTATTCTTTGTTACATTACTTCTCTCAGCATCTCTTGGCAGTTTAGTTTTAATTGCTGTTGATCGTTATGTGGCTGTGTGTCACCCTCTACTGTACACACAGAAAATAACCATGACTAAAACATTCTGTTTGAGTATCTGTCTGAGCTGGGTTTGCTTTTCAGCTTATCTTACTGGcctgataaatattaataatcaagattttgacacttcACACAGAACAGATGTGTGTTACGGACAGTGTATAATCATGATAACATTTAGTTGGATACTCACTGATCTGTTTGTGTCTTTTATTTTTCCTTGCACTCTGATCTTCACTTTATATTTGAGGATTTTCTATGTTGTTCATCAGCAAGTGAAGGTTATAAACTCTCTGATGAAGGGTGGTAAATGTGTAACGGAGGGTTCAGTGGAGAGGAAATCTGAGagtaaagctgctttgacttTAGGAATCATTGTATTAGTTTATCTGCTTTGCTATATTCCTTACTATATCTGTTCTCTAACTGTAAACTCTTCCACAGCTTTGAATGTTTTAATATGGATTGTGTATTCTAACTCGGGTATGAATCCTCTGGTTTATGCTTTGTTTTACCCCTGGTTTAAAAAGACAGTTAAACTCATTTTAACTTTGAAAATATTTCAGCAGGCATCCTCTCTAATCAATATTTTTACGgaacattaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060414-1 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000141992

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006122 lncRNA downstream 1248162 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005778 lncRNA downstream 1674016 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00005474 lncRNA downstream 1811540 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00006121 lncRNA downstream 1822719 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00006120 lncRNA downstream 1907155 38412930 ~ 38431095 (-) False XLOC_002967
TCONS_00005520 lncRNA upstream 150327 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00005521 lncRNA upstream 158849 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005779 lncRNA upstream 281671 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00006123 lncRNA upstream 511827 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 1028798 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00005490 mRNA downstream 4931 40332261 ~ 40333319 (-) False XLOC_002979
TCONS_00005488 mRNA downstream 1016883 39314578 ~ 39321367 (-) True XLOC_002978
TCONS_00005487 mRNA downstream 1054367 39268523 ~ 39283883 (-) True XLOC_002977
TCONS_00005486 mRNA downstream 1056775 39264802 ~ 39281475 (-) False XLOC_002977
TCONS_00005485 mRNA downstream 1139308 39178450 ~ 39198942 (-) True XLOC_002976
TCONS_00005493 mRNA upstream 7770 40347080 ~ 40348132 (-) True XLOC_002980
TCONS_00005494 mRNA upstream 11888 40351198 ~ 40352250 (-) True XLOC_002981
TCONS_00005495 mRNA upstream 20267 40359577 ~ 40360635 (-) True XLOC_002982
TCONS_00005496 mRNA upstream 26032 40365342 ~ 40366397 (-) True XLOC_002979
TCONS_00005498 mRNA upstream 39451 40378761 ~ 40380136 (-) True XLOC_002984
TCONS_00005472 other downstream 1903751 38434383 ~ 38434499 (-) True XLOC_002968
TCONS_00005468 other downstream 1961997 38376134 ~ 38376253 (-) True XLOC_002966
TCONS_00005467 other downstream 2022180 38290887 ~ 38316070 (-) False XLOC_002965
TCONS_00005463 other downstream 2263859 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005461 other downstream 2266082 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005497 other upstream 35700 40375010 ~ 40375996 (-) True XLOC_002983
TCONS_00005499 other upstream 44472 40383782 ~ 40384432 (-) True XLOC_002985
TCONS_00005503 other upstream 64684 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005507 other upstream 79497 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005514 other upstream 129062 40468372 ~ 40469394 (-) True XLOC_003000