G418981


Basic Information

Item Value
gene id G418981
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2092494 ~ 2093678 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU481280
TGGCCACAAAAGTGAGTACACCCCTAAGTGAAAATGTCCAAATTTGGCCCAAAGTGTCAATATTTTGTGTGGCCACCACTATTTTCCAGCACTGCCTTAACCCTCTTGGGCATGGAGTTCACCAGAGCTTCACAGGTTGCCACTGGAGTCCTCTTCCACTCCTCCATGATGACATCACGGAGCTGGTGGATGTTAGAGACCTTGCTCTCCTCCACTTTCCGTTTGAGGATGCCCCACAGACGCTCAATAGGGTTTAGGTCTGGAGGCATGCTTGGCCAGTCCATCACCTTTACCCTCAGCTTCTTTAGCAAGGCAGTGGTCGTCTTGGAGGTGTGTTTGGGGTTGTTATCATGTTGGAATCCAATATGTTGGATCATGCTCTGCCTCAGTATGTCACAGTACATGTTGGCATTCATGTTTCCCTCAATGAACTGTTGCTCCCCAGTGCCGGCAGCACTCATGCAGGCCCAGACCATGACACTCCCACCACCATGCTTGACTGTAGGCAAGACACACTTGTCTTTGTACTCCTCACCTGGCTGCCGAAAATGGCTAAATTGGCACAATTTGGACATTTTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU481280 True 581 TUCP 0.50 2 2092494 2093678

Neighbor

gene id symbol gene type direction distance location
CI01000304_01877287_01890608 SYK coding upstream 201748 1875390 ~ 1890746 (+)
CI01000304_01829156_01835147 ST8SIA4 coding upstream 257329 1829156 ~ 1835165 (+)
CI01000304_01718700_01722248 NA coding upstream 370218 1718328 ~ 1722276 (+)
CI01000304_01681164_01706159 ANKRD55 coding upstream 386097 1681164 ~ 1706397 (+)
CI01000304_01392985_01399147 CA9 coding upstream 693341 1392985 ~ 1399153 (+)
CI01000304_02136252_02167869 SEC31A coding downstream 42574 2136252 ~ 2168463 (+)
CI01000304_02206338_02219356 NA coding downstream 112660 2206338 ~ 2219642 (+)
CI01000304_02229520_02235812 HNRNPDL coding downstream 135461 2229139 ~ 2236204 (+)
CI01000304_02236583_02240921 HNRNPD coding downstream 142689 2236367 ~ 2241608 (+)
CI01000304_02254859_02262580 MAT2AL, METK1 coding downstream 160216 2253894 ~ 2264078 (+)
G418980 NA non-coding upstream 5966 2086310 ~ 2086528 (+)
G418909 NA non-coding upstream 25631 2059352 ~ 2066863 (+)
G418886 NA non-coding upstream 165934 1926222 ~ 1926560 (+)
G418885 NA non-coding upstream 166357 1925916 ~ 1926137 (+)
G418884 NA non-coding upstream 167265 1924419 ~ 1925229 (+)
G418998 NA non-coding downstream 86883 2180561 ~ 2184793 (+)
G419001 NA non-coding downstream 93053 2186731 ~ 2187419 (+)
G419006 NA non-coding downstream 134963 2228641 ~ 2228848 (+)
G419019 NA non-coding downstream 172088 2265766 ~ 2327739 (+)
G418116 NA other upstream 1217245 872670 ~ 875249 (+)
G418059 NA other upstream 1528043 558092 ~ 564451 (+)
G417987 NA other upstream 1864641 226703 ~ 227853 (+)
G420445 NA other downstream 2209658 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 3079545 5173426 ~ 5176791 (+)
G421162 NA other downstream 4147555 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 5258971 7352621 ~ 7354396 (+)
G421435 NA other downstream 5390463 7484141 ~ 7484688 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) LOC103027177 tmem261,LOC103027177 misc NC_035916.1 CM008319.1 12191356 ~ 12209449 (+)