G419354


Basic Information

Item Value
gene id G419354
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2262502 ~ 2266241 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU481701
GAAGAACAAGACTCTTGCATGATGGGGACACGCTTGAAGGTGCTGCGGGTGTTCAAAGATCTGCACAAGACAAGAAGAGATGTTTTTAAAGATGATGGCAGAGCTCTGACAGCTGCCAGGTTAAAAATCAATGAAGAATTCAAAAAGAACAAGAATGAAACGTCAGAAGAAAATATTAAAGAGATGCTTAAAATGGCCCGATCAGTTGAGACCATCCTTCGTGAAAGTGTGATACAGGTTGAGCATGTGGAGGAAAATAAAATCTTGTTGCGGCCCCGCAAGAGTCTCCTGCTGGAAAATGTGCCGTACTGTGATTCACCCAGGAAAAAGACATGATCCTGATTTACTCCCACTGAAACCAATCACTTTTCTTCAGTGTTTTTCATATGCGACAGACCAAGGCACGTCTCTGATATAGGACAAGGAAGCAATCATTCATTCTTCATTTCCACTGGAATATCACACAGATGCCATAATAACATAACTATAATAACTTATATGTTGGTTCAAAGCTGATGTGATTGTGTTGAATTAAATGCTATGAATTGCCATATTGTAAATAGTATTTGTTTGGCTGAGTGTTGAATAAATTGTAAAAAATGTCTCTTTCAACATAATTGCAGTTCTTTTTTGGGTACAGGACAGATATACACTACATTTTAAGTAAAACCTAATAAATAAGTGGTAATATATTTTGAATACTCTTTAAAATGAGTAGACACTAGTGCTGGTAAACATGAAAGAAGTGTTATTAATTGACAATTGACTTGGTATACATGAAAAAAGGACAATTATGTAATAACTAATAAGGTACCATTAAAAGGGGTTTCACCCCTTCACAGTCATCACAGTTATTATATGATCCACAAGATGTAATAATATAAAAAAAATCACATTTTCCACATAATTCATTAACTAACTGAATTCTATTAATTCATATTAAACATGCTCCATTCTAATTTACTGTCTAGAATATGAAAACATGTCTATAAATTAAACAATTTATAAAGTCTTGATCACAGTAAAGCATTTAGCGCAAATACTATCATAATCGTTCAAAATTGCAAGGAATGTAGAGGCAATTCTAATTCTTTGTGTCACAGAATATCAGAAGATGAGTTTCTTCGGCTTTTCCCAAGGAAATTCCTCTCGTCCAAAGTGTCCATAGCAGGCTGTTTTCTGGTAG
>TU481700
GATTCTTTCAGTTTAATCCTGATATTTATTACTAAAAAATAAAATCATAAAGCAGGGCGTAAAAAACTATTCTTATAAGTGCAGTGTTCGCAGAGTCAGCGCGTCCTCCAGTACAACAGGCGGCGCTGTGCGCCACAATAGAACAAACATGTTCAGAAGAACAAGACTCTTGCATGATGGGGACACGCTTGAAGGTGCTGCGGGTGTTCAAAGATCTGCACAAGACAAGAAGAGATGTTTTTAAAGATGATGGCAGAGCTCTGACAGCTGCCAGGTTAAAAATCAATGAAGAATTCAAAAAGAACAAGAATGAAACGTCAGAAGAAAATATTAAAGAGATGCTTAAAATGGCCCGATCAGTTGAGACCATCCTTCGTGAAAGTGTGATACAGGTTGAGCATGTGGAGGAAAATAAAATCTTGTTGCGGCCCCGCAAGAGTCTCCTGCTGGAAAATGTGCCGTACTGTGATTCACCCAGGAAAAAGACATGATCCTGATTTACTCCCACTGAAACCAATCACTTTTCTTCAGTGTTTTTCATATGCGACAGACCAAGGCACGTCTCTGATATAGGACAAGGAAGCAATCATTCATTCTTCATTTCCACTGGAATATCACACAGATGCCATAATAACATAACTATAATAACTTATATGTTGGTTCAAAGCTGATGTGATTGTGTTGAATTAAATGCTATGAATTGCCATATTGTAAATAGTATTTGTTTGGCTGAGTGTTGAATAAATTGTAAAAAATGTCTCTTTCAACATAATTGCAGTTCTTTTTTGGGTACAGGACAGATATACACTACATTTTAAGTAAAACCTAATAAATAAGTGGTAATATATTTTGAATACTCTTTAAAATGAGTAGACACTAGTGCTGGTAAACATGAAAGAAGTGTTATTAATTGACAATTGACTTGGTATACATGAAAAAAGGACAATTATGTAATAACTAATAAGGTACCATTAAAAGGGGTTTCACCCCTTCACAGTCATCACAGTTATTATATGATCCACAAGATGTAATAATATAAAAAAAATCACATTTTCCACATAATTCATTAACTAACTGAATTCTATTAATTCATATTAAACATGCT
>TU481699
GAAGAACAAGACTCTTGCATGATGGGGACACGCTTGAAGGTGCTGCGGGTGTTCAAAGATCTGCACAAGACAAGAAGAGATGTTTTTAAAGATGATGGCAGAGCTCTGACAGCTGCCAGGTTAAAAATCAATGAAGAATTCAAAAAGAACAAGAATGAAACGTCAGAAGAAAATATTAAAGAGATGCTTAAAATGGCCCGATCAGTTGAGACCATCCTTCGTGAAAGTGTGATACAGGTTGAGCATGTGGAGGAAAATAAAATCTTGTTGCGGCCCCGCAAGAGTCTCCTGCTGGAAAATGTGCCGTACTGTGATTCACCCAGGAAAAAGACATGATCCTGATTTACTCCCACTGAAACCAATCACTTTTCTTCAGTGTTTTTCATATGCGACAGACCAAGGCACGTCTCTGATATAGGACAAGGAAGCAATCATTCATTCTTCATTTCCACTGGAATATCACACAGATGCCATAATAACATAACTATAATAACTTATATGTTGGTTCAAAGCTGATGTGATTGTGTTGAATTAAATGCTATGAATTGCCATATTGTAAATAGTATTTGTTTGGCTGAGTGTTGAATAAATTGTAA
>TU481702
TGATCGATGTGAGCTGGACGGTCAGTGAGACCAACGAATAAAAGGTAGAGAACGTTTTAATATTACGTTTAGCCCACTGATTTTTGTTTAGATTAACCTTTATATTTGAACTGACCCAATGATTAAACAACACTACCCATCTGACCCTGAACACAGGGGAAAGATTATTTACTCTTATATGAGGGTCGATCTAATACATGTTCATGATTCTGAGGAAACTTTTCTTGTTGCTGTAACATTTCCTTCTTTGTTCTTTCATTTCAGATTAAGACACGTGTGGAAGATTCATCTCAATATTTATAGTGTTTGTGTGCTTATTTGATTAATAAATAGTTCTTGTTCGTTAGTGTTTGACTGTCTTGTACTCTTTTGTTCTTCTGTCCTGTGGAATTCAATGCATTTCTTAATAAACAATCTTTCTGTGGTTGAGCTGCATTTACTCATGGAAAACCTGGAAGTGTCAGGTTGTTTTAAAACGTATAATAAATTTTGAAATTTTGACTGATGCCGAAGTTTATGTTCTGGTTTATATTGCAAATCTTTACGACTAAGACACTATAAAATGGTTTGTAAGAATGTATGCATCACAATATTGTTAAAGTATTTGTTTAGAAATCTATATTAAAATATACAAATGAATATAAGTACTATGGAAGTTATTAGAAAAAGAATGTTATAGAATAGTTAAAAAGCAAAAGATAAATCTTAAAATAGGCAGAAAAAATTAAATGTTCAATATTACCAATAAATAAATTAAAAAATGCAAATATCTGGAGATGACCACATGGTGCTTACATATTAACCTCAACTCGTAACAATATTGTGAGGAAAAATTACCAAATAAGCATTTTCTTTAATTTATAAAAAATATACGTTAATCGAAAACACAAAGCATCTAACCGATTCTTTCAGTTTAATCCTGATATTTATTACTAAAAAATAAAATCATAAAGCAGGGCGTAAAAAACTATTCTTATAAGTGCAGTGTTCGCAGAGTCAGCGCGTCCTCCAGTACAACAGGCGGCGCTGTGCGCCACAATAGAACAAACATGTTCAGAAGAACAAGACTCTTGCATGATGGGGACACGCTTGAAGGTGCTGCGGGTGTTCAAAGATCTGCACAAGACAAGAAGAGATGTTTTTAAAGATGATGGCAGAGCTCTGACAGCTGCCAGGTTAAAAATCAATGAAGAATTCAAAAAGAACAAGAATGAAACGTCAGAAGAAAATATTAAAGAGATGCTTAAAATGGCCCGATCAGTTGAGACCATCCTTCGTGAAAGTGTGATACAGGTTGAGCATGTGGAGGAAAATAAAATCTTGTTGCGGCCCCGCAAGAGTCTCCTGCTGGAAAATGTGCCGTACTGTGATTCACCCAGGAAAAAGACATGATCCTGATTTACTCCCACTGAAACCAATCACTTTTCTTCAGTGTTTTTCATATGCGACAGACCAAGGCACGTCTCTGATATAGGACAAGGAAGCAATCATTCATTCTTCATTTCCACTGGAATATCACACAGATGCCATAATAACATAACTATAATAACTTATATGTTGGTTCAAAGCTGATGTGATTGTGTTGAATTAAATGCTATGAATTGCCATATTGTAAATAGTATTTGTTTGGCTGAGTGTTGAATAAATTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU481701 False 1186 TUCP 0.35 5 2262502 2265185
TU481700 False 1105 TUCP 0.35 5 2262738 2265340
TU481699 False 596 TUCP 0.39 5 2263092 2265185
TU481702 True 1652 TUCP 0.34 5 2263092 2266241

Neighbor

gene id symbol gene type direction distance location
CI01000304_02244094_02244588 NA coding downstream 17914 2240069 ~ 2244588 (-)
CI01000304_02220391_02227729 ENOPH, ENOPH1 coding downstream 34184 2219885 ~ 2228318 (-)
CI01000304_02184710_02202104 NA coding downstream 60093 2184403 ~ 2202409 (-)
CI01000304_02131491_02133762 NA coding downstream 126941 2131300 ~ 2135561 (-)
CI01000304_02066780_02080386 SPTLC1 coding downstream 182116 2066551 ~ 2080386 (-)
CI01000304_02299398_02304171 NA coding upstream 32902 2299143 ~ 2305162 (-)
CI01000304_02314977_02384157 NA coding upstream 48736 2314977 ~ 2384157 (-)
CI01000304_02595522_02611332 GRIN3A coding upstream 329281 2595522 ~ 2611332 (-)
CI01000304_02694838_02711363 NA coding upstream 428419 2694660 ~ 2711502 (-)
CI01000304_02900497_02900924 NA coding upstream 633558 2899799 ~ 2902102 (-)
G419356 NA non-coding downstream 22818 2236305 ~ 2239684 (-)
G419353 NA non-coding downstream 26396 2229384 ~ 2236106 (-)
G419363 NA non-coding downstream 100602 2102457 ~ 2161900 (-)
G419418 NA non-coding upstream 152242 2418483 ~ 2418785 (-)
G419422 NA non-coding upstream 154902 2421143 ~ 2421440 (-)
G419427 NA non-coding upstream 167108 2433349 ~ 2433582 (-)
G419428 NA non-coding upstream 172281 2438522 ~ 2438725 (-)
G419430 NA non-coding upstream 174272 2440513 ~ 2440798 (-)
CI01000304_04263955_04264962 NA other upstream 1997504 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 2395575 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 4211210 6480743 ~ 6483986 (-)
G422354 NA other upstream 4364845 6631086 ~ 6631499 (-)
G422378 NA other upstream 4478438 6744679 ~ 6783046 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location