G422354


Basic Information

Item Value
gene id G422354
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6631086 ~ 6631499 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU485082
GGCCACAAAAGTGAGTACACCCCTAAGTAAAAATGTCCAAATTGGGCCCAAATAGCCATTATCTCTCCCTGGTGTCATGTGACTCGTTAGTGTTACAAGGTCTCAGGTGTGAATGGGGAGAACTCTCTGAGGATCTGAAAAAAAGAAATGTTGCTCTACATAAAGATGGCGTTGGCTTTAAGAAGATTGCCAAGACCCTAAACCTGAGCTGCAGCACGGTGGTCAAGACCATCCAGTGGTTTAACAGGACAGGGTTCACTCAGAACAGGTCTCGCCATGGTCGACCAAAGAAGTTGAGTGCATGTGCTCAGCGTCATATCCAGAGGTTGTGTTTGGGGAAATAGACGTATGAGTGCTGCCAGCATTGCTGCAGAGGTTGAAGGGGTGGGGGGTCAGCCTGTCAGTGCTCAGACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU485082 True 414 TUCP 0.49 1 6631086 6631499

Neighbor

gene id symbol gene type direction distance location
CI01000304_06515961_06519125 NA coding downstream 111961 6515896 ~ 6519125 (-)
CI01000304_06507688_06509486 NA coding downstream 121464 6507542 ~ 6509622 (-)
CI01000304_06489010_06490993 NA coding downstream 138892 6488028 ~ 6492194 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 coding downstream 147100 6480743 ~ 6483986 (-)
CI01000304_06473293_06476260 NA coding downstream 154720 6473293 ~ 6476366 (-)
CI01000304_06659869_06667425 NA coding upstream 28325 6659824 ~ 6667499 (-)
CI01000304_06706476_06715064 GGCX coding upstream 74571 6706070 ~ 6715064 (-)
CI01000304_06725873_06727044 NA coding upstream 94200 6725699 ~ 6727044 (-)
CI01000304_06738434_06742551 STOML2.L, STOML2, STML2 coding upstream 106755 6738254 ~ 6742551 (-)
CI01000304_06867535_06870134 NA coding upstream 235618 6867117 ~ 6870134 (-)
G422353 NA non-coding downstream 211 6630578 ~ 6630875 (-)
G422343 NA non-coding downstream 18969 6611768 ~ 6612117 (-)
G422332 NA non-coding downstream 70369 6560486 ~ 6560717 (-)
G422331 NA non-coding downstream 71077 6559787 ~ 6560009 (-)
G422321 NA non-coding downstream 111641 6510991 ~ 6519445 (-)
G422355 NA non-coding upstream 152 6631651 ~ 6633786 (-)
G422357 NA non-coding upstream 4334 6635833 ~ 6636140 (-)
G422359 NA non-coding upstream 5727 6637226 ~ 6637448 (-)
G422373 NA non-coding upstream 55429 6686928 ~ 6687167 (-)
G422420 NA non-coding upstream 275886 6907385 ~ 6970870 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 1958139 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2365885 4263846 ~ 4265201 (-)
G419354 NA other downstream 4364845 2262502 ~ 2266241 (-)
G419353 NA other downstream 4394980 2229384 ~ 2236106 (-)
G422378 NA other upstream 113180 6744679 ~ 6783046 (-)
G422810 NA other upstream 998660 7630159 ~ 7652703 (-)
G423386 NA other upstream 2230724 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 2936857 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 3105247 9736746 ~ 9738777 (-)

Expression


Co-expression Network