RNA id: TU485082


Basic Information

Item Value
RNA id TU485082
length 414
RNA type TUCP
GC content 0.49
exon number 1
gene id G422354
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6631086 ~ 6631499 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCCACAAAAGTGAGTACACCCCTAAGTAAAAATGTCCAAATTGGGCCCAAATAGCCATTATCTCTCCCTGGTGTCATGTGACTCGTTAGTGTTACAAGGTCTCAGGTGTGAATGGGGAGAACTCTCTGAGGATCTGAAAAAAAGAAATGTTGCTCTACATAAAGATGGCGTTGGCTTTAAGAAGATTGCCAAGACCCTAAACCTGAGCTGCAGCACGGTGGTCAAGACCATCCAGTGGTTTAACAGGACAGGGTTCACTCAGAACAGGTCTCGCCATGGTCGACCAAAGAAGTTGAGTGCATGTGCTCAGCGTCATATCCAGAGGTTGTGTTTGGGGAAATAGACGTATGAGTGCTGCCAGCATTGCTGCAGAGGTTGAAGGGGTGGGGGGTCAGCCTGTCAGTGCTCAGACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485081 lncRNA downstream 211 6630578 ~ 6630875 (-) True G422353
TU485071 lncRNA downstream 18969 6611768 ~ 6612117 (-) True G422343
TU485059 lncRNA downstream 70369 6560486 ~ 6560717 (-) True G422332
TU485058 lncRNA downstream 71077 6559787 ~ 6560009 (-) True G422331
TU485045 lncRNA downstream 111641 6510991 ~ 6519445 (-) True G422321
TU485084 lncRNA upstream 152 6631651 ~ 6633735 (-) False G422355
TU485086 lncRNA upstream 152 6631651 ~ 6633786 (-) False G422355
TU485087 lncRNA upstream 152 6631651 ~ 6633735 (-) True G422355
TU485090 lncRNA upstream 4334 6635833 ~ 6636140 (-) True G422357
TU485092 lncRNA upstream 5727 6637226 ~ 6637448 (-) True G422359
CI01000304_06515961_06519125.mRNA mRNA downstream 111961 6515896 ~ 6519125 (-) True CI01000304_06515961_06519125
CI01000304_06507688_06509486.mRNA mRNA downstream 121464 6507542 ~ 6509622 (-) True CI01000304_06507688_06509486
CI01000304_06489010_06490993.mRNA mRNA downstream 138892 6488028 ~ 6492194 (-) True CI01000304_06489010_06490993
CI01000304_06480836_06483554.mRNA mRNA downstream 147100 6480743 ~ 6483986 (-) False CI01000304_06480836_06483554
CI01000304_06473293_06476260.mRNA mRNA downstream 154720 6473293 ~ 6476366 (-) True CI01000304_06473293_06476260
CI01000304_06659869_06667425.mRNA mRNA upstream 28325 6659824 ~ 6667499 (-) True CI01000304_06659869_06667425
CI01000304_06706476_06715064.mRNA mRNA upstream 74571 6706070 ~ 6715064 (-) True CI01000304_06706476_06715064
CI01000304_06725873_06727044.mRNA mRNA upstream 94200 6725699 ~ 6727044 (-) True CI01000304_06725873_06727044
CI01000304_06738434_06742551.mRNA mRNA upstream 106755 6738254 ~ 6742551 (-) True CI01000304_06738434_06742551
CI01000304_06867535_06870134.mRNA mRNA upstream 235618 6867117 ~ 6870134 (-) True CI01000304_06867535_06870134
TU484955 other downstream 147591 6477451 ~ 6479033 (-) False G422250
TU484956 other downstream 147591 6477451 ~ 6479033 (-) False G422250
TU484957 other downstream 147591 6477451 ~ 6479033 (-) False G422250
TU484958 other downstream 147591 6477451 ~ 6479033 (-) True G422250
TU484137 other downstream 1958139 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU485117 other upstream 113180 6744679 ~ 6783046 (-) True G422378
TU485601 other upstream 998660 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 2230724 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 2936857 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 3105247 9739353 ~ 9739471 (-) True G424168

Expression Profile