CI01000304_06489010_06490993


Basic Information

Item Value
gene id CI01000304_06489010_06490993
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6488028 ~ 6492194 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_06489010_06490993.mRNA
ACACACAAACCATTCTAAAGTCGGTAAAGTGTCTGTTTATTAGTACAGTGAAAACGGGACAAAGATTAACCCAAGATACTTATTTACATAAATTTACAAATTATATACATTTTATAACCAAGCAAATAGGTTCACCGAGTAAAAGAGAAAAGAACGAGACCGTGCCAAATCAAAGAAAGAAACAACACATAACCAATCTTACAAGAAAAAAAAGAAAGAAAGAAAAAGAAAAACTTCGAATCTATTTACAGTCTTCTTCTAATCTAACTCAACCATCAATATTCACAAAAACCCCTAAATTAAGTAAAAAGAAAAATCTTCAGCGTCAAAGACGCCCTAAATAAAACTGCTCTTACTACAAACCAAAAATACAAAAGGTGGCACGTGTCACTAGTGTTCTATACACAATTAAAAAACTCAGTGTGGCACATGTTTATCACGTGATATCTTTTTTCTCTTTCCCCGTTTAGTAACAGGTTTGACAACCAGGTAACAAAAACGGTGAAAAACTTAGAGAGAAAAAATCGAATGAGCCATAGTTCACAAAGTTGTCAAAGAACACAGACTTTACCAATAAGGTATCAAACATTAAAAGTACAGGGCAAACGAACAAATAAGCACGCGAGTACTATCACAACAGGACAATAGAATGTGTGCTCTAGCGTACACGAGAGCTCCAGCTTCCTGCACAGGTGCGCTCTTTATAACCAAATAGCGCGCCCTCATTGGTGAAGCCGCGCGTTGTCGTCACCAAGCGTCTCGATGACTGACAGAGGATTAGACCACTCAGGTACCCGCATCACCCTGCTGAAAACGAAAGTAAAGACAGAGAAAAAAAGAAGGGGAGGAAAAAAAAAACACCGTACGCATAATAATAATTATAACAGTGGACGTAACAAACACGTTCACGTGTGAGCTGTCTTACCTGAGGGACGTGCTCATCTGATTACCTCCTGTCTTCTTCCTCTGTGATCTAGCCTGGACTTTGATTTGTTATTGACTGTTATTACTCCAGTAAATTTTGAATCACATTTCTGCATTTGAGTCATTTTCCTTGAGATCCCTGACAGAATCCACACTGACTGCTGAATTCTGATCGATCAAGAGAAGGTTATCTTCATTTAATTACTGTTATTTTAATATTGATTATGTTTTATCCATACTGAACTCACTATATAATGATTTGGTTCTGAACAGAGCAATGAAGCTTTATCTTAGCATCCTGCTACTCTTCAGCTGCCAGTTCATTCACACTCTGGCTTTAAACTGTGAAATGATTTGTGGCACCCTGAAGCAGATAGACGCTGGGTCAGGCTCAGTGGTTGGAGTGAACAATCAAAATGAGGTCTTCATCCTGATTAATAACGTCTTCACAAAGGTCTTTACGTCTCTAAAGCACTTCACTGTTGGTCCTGCTGGTCAGTTCGGGGTGGATACAGCAAACAACATCTTCAAGGTGCGGGGTGGCAGCCTTGTGCAGATTGCAGGCCTTCTCAAACAGGTGGATGCTGGAGGAGATCAGAACATTGCAGGTGTCAATATGAATGATAACATATATTGTTTAAATATGGATGCTAACAACAAATTGCCATCCAGCTCTGTTCCTTGGGTTCATATTGGTGGAAAGCTGAAGTATTACAGCTGTGGCCCGTACAGCTGTTGGGGAGTGAACAGCAATGATCAAATCTACATCATGAAGGATGTGTCTGGTAATGCCTGTTCCGGGTCCAACTTTGTGAATATTCCTGGACTTCTGTCCATGATTGAAGTAGCAACTGACGGCAGTGTCTTTGGTGTCAACTCTCAAGGGGCCTTATACCAAAGAACTGGCATCACTCGATCCAACCCCGCTGGCACAAACTGGATCTCGATGGTTGTCTGTCCCAATGGCCACAAGCACGTGAGCTTTGACCTGGGATTGCTGTGGGTCGTCTGTGTTGATGGCTCCATCCGTAAATGTACTTTATAGTCTGTCATGCATCACTGCAGCAACAGAGGAGCTCAATCATTAACAGAAACCTCAAAGTAATCAGATATTATTAACCAGGCACGTGCACAGGTAGGGCTCAACCTGTGCAGAGCACATGCCCTTTTTGCCCTTACTCCGAAGCCCTTACTTTTGTTGTGGTGTTTTTTTTTTTTTTTTTTTAAGGCAACCACAATAAACCTCACAAGAATCGAAAATGGGCTAATTTCCCATAGACTAGAGTGAGACCATAGAAGTATTTTCAGCTGCCACAATCTGTTTTGCATGCGTCTCAAGGGTGATTTCAGTTCAAGTGAAGCGGCAGCGCGGAGTGCACATGAACCAATCATCTCTTCCACGTATCAACACGAAATAAACGTTAATGAACACCAACAGGAATGTTGAAAGATACAGTACAGTATACCGAAATCAGTATCATGTCACAGATAATCGCTTGATTATTGTTTCAACCGCGGAAAGATGTCAACAAAACAGCTTGTAAACAATGTCAAATAACGTCACATTTACCTCAGAAAAGCCGTTCAATGTCCAATGTCAAATGAACTTTGAGAGCAGCATTTTGTTAAATATATGCTATATTTCATATTCATTCTATTTTTACTTAACCCTTTCTTCAATACTATTTAATGTTTGAATAAATCCGTTTTATGACAGCCACCATTTAACGTATTAAAAAATGTATAGAAACATAATTGTGTCATTAAAATTTATTAGTATAACGTTATTAATTTTAACCTTTAATATTATAATTATGTACCAACTGGGGTTAAATATAGTTTACAGCATTAGTTGAGAGATTTTTTTTTTTTTCATTGAGGAAAGTTACCATGTACTGTACCTGATAGGCCCCAAATTAATTATTGCATCGAAGTTAATCTAATCGAAATCGAATCGCATACTTGTGAATTGAAATCGAATCCAGTTGTGAAATTTGTGTCAATGCCCAGCCTATAGTGTCAATAAA

Function

NR:

description
LOC561528 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_06489010_06490993.mRNA True 2951 mRNA 0.39 5 6488028 6492194

Neighbor

gene id symbol gene type direction distance location
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 coding downstream 4042 6480743 ~ 6483986 (-)
CI01000304_06473293_06476260 NA coding downstream 11662 6473293 ~ 6476366 (-)
CI01000304_06461313_06465520 NA coding downstream 22508 6460456 ~ 6465520 (-)
CI01000304_06395132_06433884 SKIV2L2 coding downstream 54144 6395035 ~ 6433884 (-)
CI01000304_06324113_06327228 HVCN1 coding downstream 159849 6324091 ~ 6328179 (-)
CI01000304_06507688_06509486 NA coding upstream 15348 6507542 ~ 6509622 (-)
CI01000304_06515961_06519125 NA coding upstream 23702 6515896 ~ 6519125 (-)
CI01000304_06659869_06667425 NA coding upstream 167630 6659824 ~ 6667499 (-)
CI01000304_06706476_06715064 GGCX coding upstream 213876 6706070 ~ 6715064 (-)
CI01000304_06725873_06727044 NA coding upstream 233505 6725699 ~ 6727044 (-)
G422256 NA non-coding downstream 39533 6447744 ~ 6448495 (-)
G422246 NA non-coding downstream 163034 6324459 ~ 6324994 (-)
CI01000304_06270879_06289706 TBC1D10AB non-coding downstream 218269 6267565 ~ 6290510 (-)
G422240 NA non-coding downstream 223983 6263762 ~ 6264045 (-)
G422232 NA non-coding downstream 256561 6231222 ~ 6231467 (-)
G422318 NA non-coding upstream 8525 6500719 ~ 6501031 (-)
G422321 NA non-coding upstream 18797 6510991 ~ 6519445 (-)
G422331 NA non-coding upstream 67593 6559787 ~ 6560009 (-)
G422332 NA non-coding upstream 68292 6560486 ~ 6560717 (-)
G422343 NA non-coding upstream 119574 6611768 ~ 6612117 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 1815081 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2222827 4263846 ~ 4265201 (-)
G419354 NA other downstream 4221787 2262502 ~ 2266241 (-)
G419353 NA other downstream 4251922 2229384 ~ 2236106 (-)
G422354 NA other upstream 138892 6631086 ~ 6631499 (-)
G422378 NA other upstream 252485 6744679 ~ 6783046 (-)
G422810 NA other upstream 1137965 7630159 ~ 7652703 (-)
G423386 NA other upstream 2370029 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 3076162 9566730 ~ 9575706 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location