CI01000304_06324113_06327228 (HVCN1)


Basic Information

Item Value
gene id CI01000304_06324113_06327228
gene name HVCN1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6324091 ~ 6328179 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_06324113_06327228.mRNA
AAAAATTAAAATGACCAGATTAAAGTCTTGTCGTTGTTTTACATTTAATTGTCGTCACTCGTAAACAGTGCACGTGAAAAATTTGTTGACTTTGAATGTTAAAATGTCACAGGAAATCACGAGTTATAGCTCAAGTCACGGATGAAAAGTGAGTGTTTTATGATGCATGTCGACTGTGTCGCAGAAAAATAGCCATAAACTGGCATTTTGTGTAGTCAGATGTACTATACTTTTGTTGTATAAATTGTTTTGCATTGTCTCTTAAAATAAGACCTCTGTTGAAGATTTTTGTAGATGGTGGCATGCAAAACATTACTTTAAGCCTAAGATTTGAATACTGAAACGCCATTTAAAGTGGCGAGAACTGCTGTCTTTTTATGCATAGGCTATTTATGATATGATTATCCTACACGTGTTTGCCTTTTAATTTTTGTGTTAATTCAGTCATCCAAACTATAATTTCAGTATCATCAAAATTGTATGTAGGCTATTGCTGTTGGGTAACATACAAAGAAACTAATATCTATAATTTATGATTGATTATATTTGCTTTTTCTATAGGCTATGCTACTGTTTACATTTTGCTGTTTCATTAATTGCTTTATATTTAATACTATTTAATACTTTCTTTTAATGTTGCTTAAAAGTACGCCTGGAATGGTTATGACAACAATTAGCCCTGCTAGTAGTCAGTGAATTGTATGCTTCTTGTCATAGTGTTAGAGTTAAATGTTTTTTTTTGTTTTATAAACAAGATTGTGCCTACATAAACTGACTTTAAAATAATAATTACTTGAGTAAAAGTGTGACAACTAGCCCCGGTCTCAACAACATTTGGTTTAAGCCGTCTTCATGATCACAATTTAAGACAGTCACAAATCTAAATACTGAATCAAATACACAATCAGGTGCTGTTCCATTTGTTTAGCGTTCATGTGACCCCTGAGGAAAATGTCCCGTTATTTGAAGCATTTCACAGCGGTGGGTGATGAGCAAAGCACCGCCGCCCAGTGGCATGACGAGGAGCCGCACGACGCCAGTGAAGACGTAGAGCTCGCCACAGGGCAGCACTTGGAGCAGGTCAGCTTCAGGGACTCCCTACGCCGCCTCTACAAAACAGAGAGGTTTCAGATTGTTGTTGTGTGCTTGGTCGTCTTGGATGCCATTTTCGTTCTGTGCGAGTTGCTTATTGACTTGTCTATCATTCAAGCAGATCATCACAGAGTCGCCCCGCAGGTATTCCACTATCTCAGCCTCGCCCTTCTCACATTCTTCATGGTGGAGCTGTCTGGAAAAATCTATGCCTATCGCCTAGAATTCCTCCACCATAAGTTCGAGGTGTTTGATGGAATTGTGGTGGTGGTATCCTTCATCCTGGATATTGTATATATATCGAAGGAAGATGCATTTGATGCCATGGGGCTTCTGATCTTGCTCAGGCTGTGGAGAGTGGCCAGGATCATTAATGGTATCTTGATCTCAGTGAAAAATCGTGCCCATCACAAAGTTCAGAAACTAAAGGAGATCAATGAAAACCTTGTTCATCAAGTCAATGAACTTCAAGAGCGTAACACAAAAATGAACGAAGAAAACACCAGGATTCGTTTGCTCTTAAAACAGCACAGCATTGAGTTTTGACGCTCCAGGGTTATTCATTAAA

Function

symbol description
hvcn1 Enables voltage-gated proton channel activity and zinc ion binding activity. Acts upstream of or within proton transmembrane transport and response to zinc ion. Is integral component of plasma membrane. Is expressed in several structures, including eye; heart; liver; neutrophil; and pleuroperitoneal region. Orthologous to human HVCN1 (hydrogen voltage gated channel 1).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_06324113_06327228.mRNA True 1660 mRNA 0.38 5 6324091 6328179

Neighbor

gene id symbol gene type direction distance location
CI01000304_06300308_06314871 PPTC7A, PPTC7B, PPTC7.S, PPTC7 coding downstream 9030 6298705 ~ 6315061 (-)
CI01000304_06270879_06289706 TBC1D10AB coding downstream 33581 6267565 ~ 6290510 (-)
CI01000304_06240590_06242902 APLNRB coding downstream 81079 6240466 ~ 6243012 (-)
CI01000304_06234231_06236303 NA coding downstream 87682 6234205 ~ 6236409 (-)
CI01000304_06222605_06223109 NA coding downstream 99817 6221146 ~ 6224274 (-)
CI01000304_06395132_06433884 SKIV2L2 coding upstream 66856 6395035 ~ 6433884 (-)
CI01000304_06461313_06465520 NA coding upstream 132277 6460456 ~ 6465520 (-)
CI01000304_06473293_06476260 NA coding upstream 145114 6473293 ~ 6476366 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 coding upstream 152564 6480743 ~ 6483986 (-)
CI01000304_06489010_06490993 NA coding upstream 159849 6488028 ~ 6492194 (-)
G422240 NA non-coding downstream 60046 6263762 ~ 6264045 (-)
G422232 NA non-coding downstream 92624 6231222 ~ 6231467 (-)
G422231 NA non-coding downstream 92923 6230942 ~ 6231168 (-)
G422229 NA non-coding downstream 95194 6228540 ~ 6228897 (-)
G422256 NA non-coding upstream 119565 6447744 ~ 6448495 (-)
G422318 NA non-coding upstream 172540 6500719 ~ 6501031 (-)
G422321 NA non-coding upstream 182812 6510991 ~ 6519445 (-)
G422331 NA non-coding upstream 231608 6559787 ~ 6560009 (-)
G422332 NA non-coding upstream 232307 6560486 ~ 6560717 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 1651144 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2058890 4263846 ~ 4265201 (-)
G419354 NA other downstream 4057850 2262502 ~ 2266241 (-)
G419353 NA other downstream 4087985 2229384 ~ 2236106 (-)
G422354 NA other upstream 302907 6631086 ~ 6631499 (-)
G422378 NA other upstream 416500 6744679 ~ 6783046 (-)
G422810 NA other upstream 1301980 7630159 ~ 7652703 (-)
G423386 NA other upstream 2534044 8862223 ~ 8865296 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location