RNA id: TU486232


Basic Information

Item Value
RNA id TU486232
length 857
RNA type TUCP
GC content 0.53
exon number 3
gene id G423386
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8862223 ~ 8865296 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCCTGGTGAGCTGCTGCCCGTGCAGTAACCTCCAGACCATCCTGCCCGCGATTTTGGTGTCGATGCCAAGAAGGCGGAAGCCATGATAGTAATGCTTGAGCTCATCCAGGACTTTCTGTCCCAGAGACTTCCTTGGCACTGCTGGGGGTGCTGGCGGTGGATGAGTGCCAGAGGCAGCCGGGACAGGGTCACCCTTTATGGGTTCAGAACCCGCAGCGGTGTCCTTGGCCTCTTGCAGCCAAGCACAAGAGCTGTGGAGGGGACGTGCAGCTACGCAACCGGGGCGGATCAAGCTGGATGTGTAACTTGGATACAGCGGCCTGGGGCACCTGGCTGTGACGGCAGCCCGTCCGAGGAACTCCGAATTGTAGCGTATGCATGCGGTCGATGGGAGTGAAGCACAGCCATGTCTTTTAGAAAGCAAGTAGGATCCTCTTGATCTTGTTACAGCGAGAAGCACCTGTGAGCTGAAAACTGCCATTTTGTGACTAACAATTGGGTATCCTGTGGAAAAAGATCCGTGTCGTGCGGTGTAATGGCTGTTATGCTGTAACCATTGGATATAGTGTCAGATCGGATGACGGTGGAGAAAAATGTTCGGCTCGACAGCGCTCCTCCTGCAGCTGAGGGTCAAATTTCCTCGGAGGCGATGGTACGGGAGAAAAACGGACCTTTTGCGGGATGTGATACTCCATTCACGACGGTATGTCACTCCTTAAATTTAAATCTAAATAGACTTATAAATTAATACATCCGAGCTGATGTACTGTTTTGATCGTATTTTAAAATGGACTGTCAGGTTGCCTCTGATACCCCAGTGAAGCCGACCGACCGCCCCACCGAGGAGGATCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486442 lncRNA downstream 189211 8672676 ~ 8673012 (-) True G423589
TU486441 lncRNA downstream 189643 8671798 ~ 8672580 (-) True G423588
TU486409 lncRNA downstream 319537 8542460 ~ 8542686 (-) True G423557
TU486402 lncRNA downstream 347982 8513906 ~ 8514241 (-) True G423551
TU486380 lncRNA downstream 383559 8478182 ~ 8478664 (-) True G423529
TU486478 lncRNA upstream 83748 8949044 ~ 8949311 (-) True G423615
TU486849 lncRNA upstream 142312 9007608 ~ 9008693 (-) False G423960
TU486850 lncRNA upstream 142312 9007608 ~ 9008693 (-) True G423960
TU486864 lncRNA upstream 172317 9037613 ~ 9098217 (-) True G423972
TU486898 lncRNA upstream 296506 9161802 ~ 9162014 (-) True G424004
CI01000304_08836330_08859572.mRNA mRNA downstream 1494 8835882 ~ 8860729 (-) True CI01000304_08836330_08859572
CI01000304_08829163_08833955.mRNA mRNA downstream 28268 8828785 ~ 8833955 (-) True CI01000304_08829163_08833955
CI01000304_08819813_08827793.mRNA mRNA downstream 34430 8818948 ~ 8827793 (-) True CI01000304_08819813_08827793
CI01000304_08789401_08798907.mRNA mRNA downstream 63190 8789228 ~ 8799033 (-) True CI01000304_08789401_08798907
CI01000304_08754563_08783858.mRNA mRNA downstream 78365 8753993 ~ 8783858 (-) True CI01000304_08754563_08783858
CI01000304_08899490_08900383.mRNA mRNA upstream 33865 8899161 ~ 8900772 (-) True CI01000304_08899490_08900383
CI01000304_08904762_08909795.mRNA mRNA upstream 39182 8904478 ~ 8910490 (-) True CI01000304_08904762_08909795
CI01000304_08913076_08936241.mRNA mRNA upstream 47406 8912702 ~ 8936241 (-) True CI01000304_08913076_08936241
CI01000304_09046090_09129612.mRNA mRNA upstream 180794 9046090 ~ 9129612 (-) True CI01000304_09046090_09129612
CI01000304_09284328_09286980.mRNA mRNA upstream 418893 9284189 ~ 9287032 (-) True CI01000304_09284328_09286980
TU485601 other downstream 1209520 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2079177 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 2230724 6631086 ~ 6631499 (-) True G422354
TU484956 other downstream 2378728 6477451 ~ 6479033 (-) False G422250
TU487066 other upstream 703060 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 871450 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 1288150 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 1288563 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 1325278 10192696 ~ 10192895 (-) True G424459

Expression Profile