RNA id: CI01000304_08819813_08827793.mRNA


Basic Information

Item Value
RNA id CI01000304_08819813_08827793.mRNA
length 2785
RNA type mRNA
GC content 0.44
exon number 16
gene id CI01000304_08819813_08827793
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8818948 ~ 8827793 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATCAATTTTGTCCTACGCGGGCATCCTTACTAACAGCCGCATGAATGTTGCTGAGCCGTATCAACCCGTCCAGTACCACTGGTTCTTCAACCAGCAGGTGGACTCCAAGGACTCCTGGCAACCCTTCAGCAGAGAAGACTCACGGCAACTGGAGGATGCTTACAGTCGAGTGGGGAAAAGTGAAAAAGATGAAGTGGTAGTGGCTACAGATGGAAGACGGTATGACGTCAGGGTACGTGAAAGAAAGCGTTACTCTGTGTATTGGGAACAGAAGCCCACCGAGGTCAGACGATGCTCCTGGTTCCACAAAGGCAGCAAAGACGTGACCTACACTCCCTACAGTGAGGAACTTAGTGAATTCCTAGAGGACGCCTATATGATTGCAGTTACGCTGGACGAATGGAAGACGAATTTGGAGCTCCCAACAGGAGAAACTGTGATCCTTCACAATCCAAAGCTGATGACACAGTATTCCATCAGCTGCAAGGACTTTCCCCCTTCCCCGTCTGAACGAACTCAACCCAAGACTCTAAAGAGAGGAACTGAGAATATTCCAGTAGAGATACCAGAGGGAGAACCAGAGATAGTAGACCACCTGGTGTTCATGGTTCACGGTATCGGTCCGGCCTGTGACATACGTCTCCGTGGCATTGTCCAGTGTGTTAATGAATTTCGAAACGCCTCCAACGGCCTCATAAACAGCCACTTCAGGCAGAGTAAGGACTCATGCATCATTGGAAGGGTTGAGTATCTTCCAGTCAACTGGCACAAAGTCTTACATGGAGAAACTACAGGAGTTGATAAAGACATTGAGAGGATAACTCTGCCTAGCATTAGCCGTCTGCGTCAGTTCAGCAACGACACCGTGCTGGACCTTTTCTTCTACAATAGTGCCACATACTGCCAGACTATTGTGGATACAGTGGCCTCTGAGATCAACCGTCTCCACAGCCTCTTCCTTCAGAGGCATCCACACTTCACAGGACACGTTTCCCTGGTTGGACACAGCCTCGGCTCATTGATCCTGTTTGATCTCCTGACCAATCAAGAGACAAGTGCAGATGCCACAGCTCATGAGCTCTATGAGGACCATCATGTTGACACAGGCTGCGGTTCCTATGAGAGTCTGGAGGAGGTGCTGAAGAGCCATGGGTTGGAGGAGCATCTCAATGTACTCCAGAGAGAACAAATGGATATGGAGTCTTTGATGCTCTGCTCAGAGAAGGACCTAAAAGATATCGGAATACCCCTTGGTCCTCGCAAGAAATTGATGAACTGTGTCAAGAAATGGAAGGTATCCATCGACTATCCTCAGTTAGCCTTTCATCCTCAGGCTTTCTTTGCTGTTGGTTCACCCATAGGAATGTTTTTAACAGTCAGAGGTATGAAGAGGATTGATCCTAATTACAGCTTCCCGACCTGCAAGAGTTTCTACAACATCTTCCATCCATTTGACCCAGTGGCATATCGGATTGAGCCCATGCTTGTGCCTCGAGACGTGGACTTGCCACCGATGTTGATACCCCATCATAAAGGCAGAAAGAGGATGCACCTTGAACTCAAAGAAGGGTTGACTCGAGTCAGTTCTGATTTACTGGGATCCCTACGAATGGTTTGGCAGAGCATTTCTCAGGTCCCATCACCAGCGCTCGCAGAGGGTGGACTCAGTTCCATGACCCCTACTGATGAAGCAGAAGTAACACCAATGGAGCAGGAGGAAGGAAACTTCACCAATGTGGGAATGTTGAATCGTGGGCGACGCATTGACTTTGTCCTTCAGGAGACACCGATTGAAAGTTTCAATGAGTACCTGTTTGCAATACAGAGCCATCTGTGCTACTGGGAGTCAGAAGATACTGCTCTGTTGGTTCTCAGAGAGATTTATGGAAATATTCCAGTGAGATGTGCTCAGTTATAAATGTTATATACCTTTTGTATAGTACTGACAACCTTTAATGCCAGTCCAGTCCAACGAATCAATTCTCTCCACATATATTAACAAGCTGATAAACTACCTAAAAAAAAAATCAAGAATTTGAATTTGGAATCCCAACTGAACTGTTGCCAGGTATTAGGATATTGCTGCAGTATTCTCAAGGCAGGCTTTGAGACATTTGATCCACACAATACCCTTTTGTGCACTAATGTGCATTGTAAAAAAACTTTCATCAAATGTATACGAATATAACTTTGGTCAGTTTTTTTTTTTTTTCTAATTGTTTATTTAATTAATATTGTGTATTCATAATGCCTGGATATTTGTGCTGTTTTTATTATTATTATCATTATTATTATTAAATTCCTAACCCAAAATAATTTTTGTGATGACTGTATTTGTATCTCAGATTCGATTTTGTTGTTAGAAATTCTTCAGATACCAACACTGTGTCTTTAAGGCAGAATTCAGATCATAGCCACCGGGAAGTTCGTTCATTTCCCATTTATCCGTCTGGAATCGTGCGCCACACATTACAAAACATCCCCTTTCCATACAGAGTCATGAACTGCCCTCCCATGCATCCTCCGCCAAGAATTCCACACAGCCAATGAACACAACAGCACTACTGCCGTCAGGATTTACGAGACTTTCAGTCCGTCTCTTTAAATGTAGAAGTTCTGATACTTGAAAATAGTCAAACTATTTATTAAGACTTGGAAAGATAAGTTTGTATGAAGATGCCCAGCCTTTGAAAAAACATCAGGAAAAGGTGAGAAACGGTCTTAATCCACAAGAATTTTACAGAAATGTTTCATTTTTTCTTATCTGCATAGAGGGAATTAAA

Function

GO:

id name namespace
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
K16545 DDHD2; phospholipase DDHD2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486442 lncRNA downstream 145936 8672676 ~ 8673012 (-) True G423589
TU486441 lncRNA downstream 146368 8671798 ~ 8672580 (-) True G423588
TU486409 lncRNA downstream 276262 8542460 ~ 8542686 (-) True G423557
TU486402 lncRNA downstream 304707 8513906 ~ 8514241 (-) True G423551
TU486380 lncRNA downstream 340284 8478182 ~ 8478664 (-) True G423529
TU486478 lncRNA upstream 121251 8949044 ~ 8949311 (-) True G423615
TU486849 lncRNA upstream 179815 9007608 ~ 9008693 (-) False G423960
TU486850 lncRNA upstream 179815 9007608 ~ 9008693 (-) True G423960
TU486864 lncRNA upstream 209820 9037613 ~ 9098217 (-) True G423972
TU486898 lncRNA upstream 334009 9161802 ~ 9162014 (-) True G424004
CI01000304_08789401_08798907.mRNA mRNA downstream 19915 8789228 ~ 8799033 (-) True CI01000304_08789401_08798907
CI01000304_08754563_08783858.mRNA mRNA downstream 35090 8753993 ~ 8783858 (-) True CI01000304_08754563_08783858
CI01000304_08727439_08731885.mRNA mRNA downstream 86831 8727316 ~ 8732117 (-) True CI01000304_08727439_08731885
CI01000304_08692093_08712203.mRNA mRNA downstream 106745 8691959 ~ 8712203 (-) True CI01000304_08692093_08712203
CI01000304_08680653_08681838.mRNA mRNA downstream 136559 8680131 ~ 8682389 (-) True CI01000304_08680653_08681838
CI01000304_08829163_08833955.mRNA mRNA upstream 992 8828785 ~ 8833955 (-) True CI01000304_08829163_08833955
CI01000304_08836330_08859572.mRNA mRNA upstream 8089 8835882 ~ 8860729 (-) True CI01000304_08836330_08859572
CI01000304_08899490_08900383.mRNA mRNA upstream 71368 8899161 ~ 8900772 (-) True CI01000304_08899490_08900383
CI01000304_08904762_08909795.mRNA mRNA upstream 76685 8904478 ~ 8910490 (-) True CI01000304_08904762_08909795
CI01000304_08913076_08936241.mRNA mRNA upstream 84909 8912702 ~ 8936241 (-) True CI01000304_08913076_08936241
TU485601 other downstream 1166245 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2035902 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 2187449 6631086 ~ 6631499 (-) True G422354
TU484957 other downstream 2335453 6477451 ~ 6479033 (-) False G422250
TU486232 other upstream 34430 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 740563 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 908953 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 1325653 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 1326066 10153859 ~ 10164330 (-) True G424458

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005045 True 1107 mRNA 0.50 9 NC_007121.7 20515436 ~ 20524387 (-)