RNA id: TU486864


Basic Information

Item Value
RNA id TU486864
length 2223
lncRNA type read_through
GC content 0.37
exon number 2
gene id G423972
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9037613 ~ 9098217 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAATATCTTCCTTTGTGTTCAGCAGAACAAAGAAAATTATACAGGTTTGGAACAACTTGAGGGTGAGTAAATGATGACAGAATTTTCATTTTTGGGGTGAACTATCCCTTTAAGGTATAAAAAAATATTTCTGTGTTTTATGTGATGCAAAAAATGTGTAATATGCAAAATATGCTGCATGTATCACATCTCTAAGTGTCCTTAAATTGAGGCATTTAAATTTCTTGTGTTTTTACACTACTAAACTGTTTCATCTTCAACCTTAGAGCTGGTCAACTCTGGCTTGAGGGCTATTGTCCTGCAGAGTTTAGCTCTAATCCTAATCAAACACACATCCATGTAATTTACAAGTAAATCTGAAGACTTTTAGCAGGTTTTGGTGTGTTTGATTGGGGTTGGAGCTAAACTCTGCAGGATGGTAGCCCTCCAGGAACAGGGTTGGCTACTCCTGCTCTACCCTGCAAGAAAATATATAGTTGAAAATGCAAAGATGTAGTCAACTAAATATAATAATATCAGTATAACATGTACATTTTTGTAGCTTGACAGAGCGTGTCTCAATTATCTTTCATTGAATGAAAAAACAGCAGCTTGGACGTTCTTAAAAGCATCTCCCTTTGTGTTACACAGAAGATAGTAAGTCATACAGGTTTGGAACAACATGAGGTTGAGTAAATGATGACAGAATTTTCATTTTTGGCTGAAAAAAAAATGTAATTGTTGATCCATATTAGCTGGAAGTGGTAATAACACATACTGTTGCCCAGGTTTTCAGAGTGGAAAATGTGGCATGGCCTGCATGTGTCCGCAGGGATCGAGACCATGTGTCAGGTCCTTTTTATGTTTTTGTTCTGTTTTTTTATTTATTTTTTTTTTTTTTCCAAGCCAATTGTGAATGTCTATCCCAGTTACAGTTGGACTGTGAGTCTGTGGATGCTTTAGAAGAGTTGAAAGCGCTCTGTGTATTTGACACGATCACTGCGCTGATAAGGTCCCTGGAGCTTTATAGCCACGGAAGTGCTGTGTTACATACAGACTAAGGGCAGACTCTGCTTACAGTCTGCCTCTGAGTTTGTGGTCAGAAATGTACTGAAATGAGTTGCTTTAACATGGGACTAATGGATATCTCTGTCTCTCTCTCACTATTTCTTTTAATGTCCTGCAGTAGTGTAATGGAGGTCAATGTGTGCTGCAGAATATCACCTCTGGCTCCCGATTAGTCCACTGACCTACAAAACCCCCTATAAAGCCCAGTAAAGCCAGTGTCTCAAATCCAAACATACTGATTGGCTGAAAACATCTCTAATAAAACTAATTCAGAATTAAGTTTGCAGCTTGGAGAAACCTCCTTTCCCTCCCATCTGCTATTCTAATCCCCATCTAGCTGACTCACTTGATTTCCATGAGAAACGACGAGCTATCTTTGAACCAAATCCAAAAGAAAAAAATTTGGAATTGAGTTGCTCTGCAAAAGAAAACACTGGTCCCCAGAAGGTTGGTACATTTCAGTCCCTGTCTTATGCACTGTTTAAGGAGCAGGTGACAGGACCCTGAAGCATATTAATATTAATTAGCAAACTAAGTGTTGAAGTGTTGTGAAACCTGCTAACTTTGGCCCTCCTGAAAAGCTGATAAAATACTTATGTGTAGGCCAACACCTGCCAACCTTCTCACACTTTTTGTGCCAATTATGAGAGAAAATCTGTGGATTTTTTTTATATATATATATATATATATATATATATATATAATTAAATTGTTTAAATGATAGCAGAAAAGGTAGCGTTTTCAATTTAGCCAAACTATTGAATGAACACATATACAAAAGACAGGAAATTCAGTTTGACATCATTATGAATTATGACTTGTAAGGTAGCCAGCATTAGTAATAAAGAATACTATGCAGATACTTAAAGGGTTAGTTCACCCAAAAATGAAAGTTCTGTCATTAATTACTCACCCTTGTGCTGTTTTACACCCGTAAGACCTTTGTTGATCTTCGGAACACAAATTAAGATATTTTTGTTTAAATCCGATGGCTCCGTGAGGCCTACATAGGGAGCAATGACATTTCCTCTCTCAAGATCCATTAATGTACTAAAAACATATTTAAATAAGTTCATGTGAGTACAGTGGTTCAATATTAATATTATAAAGCGACGAGAATATTTTTGGTGCGCCAAAAAAAACAAAATAACGACTTATATAGTGATGGCCGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486849 lncRNA downstream 28920 9007608 ~ 9008693 (-) False G423960
TU486850 lncRNA downstream 28920 9007608 ~ 9008693 (-) True G423960
TU486478 lncRNA downstream 88302 8949044 ~ 8949311 (-) True G423615
TU486442 lncRNA downstream 364601 8672676 ~ 8673012 (-) True G423589
TU486441 lncRNA downstream 365033 8671798 ~ 8672580 (-) True G423588
TU486898 lncRNA upstream 63585 9161802 ~ 9162014 (-) True G424004
TU486900 lncRNA upstream 66301 9164518 ~ 9164832 (-) True G424006
TU486902 lncRNA upstream 67924 9166141 ~ 9166543 (-) True G424008
TU486910 lncRNA upstream 95082 9193299 ~ 9193528 (-) True G424016
TU486919 lncRNA upstream 109266 9207483 ~ 9207694 (-) True G424025
CI01000304_08913076_08936241.mRNA mRNA downstream 101372 8912702 ~ 8936241 (-) True CI01000304_08913076_08936241
CI01000304_08904762_08909795.mRNA mRNA downstream 127123 8904478 ~ 8910490 (-) True CI01000304_08904762_08909795
CI01000304_08899490_08900383.mRNA mRNA downstream 136841 8899161 ~ 8900772 (-) True CI01000304_08899490_08900383
CI01000304_08836330_08859572.mRNA mRNA downstream 176884 8835882 ~ 8860729 (-) True CI01000304_08836330_08859572
CI01000304_08829163_08833955.mRNA mRNA downstream 203658 8828785 ~ 8833955 (-) True CI01000304_08829163_08833955
CI01000304_09284328_09286980.mRNA mRNA upstream 185972 9284189 ~ 9287032 (-) True CI01000304_09284328_09286980
CI01000304_09342385_09345935.mRNA mRNA upstream 243637 9341854 ~ 9345935 (-) True CI01000304_09342385_09345935
CI01000304_09508090_09519201.mRNA mRNA upstream 409080 9507297 ~ 9519333 (-) True CI01000304_09508090_09519201
CI01000304_09566730_09575706.mRNA mRNA upstream 468513 9566730 ~ 9575706 (-) False CI01000304_09566730_09575706
CI01000304_09577749_09578512.mRNA mRNA upstream 477902 9576119 ~ 9578512 (-) True CI01000304_09577749_09578512
TU486232 other downstream 172317 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 1384910 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2254567 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 2406114 6631086 ~ 6631499 (-) True G422354
TU484958 other downstream 2554118 6477451 ~ 6479033 (-) True G422250
TU487066 other upstream 470139 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 638529 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 1055229 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 1055642 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 1092357 10192696 ~ 10192895 (-) True G424459

Expression Profile