RNA id: TU486442


Basic Information

Item Value
RNA id TU486442
length 337
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G423589
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8672676 ~ 8673012 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTACTTCATAGACTGATATATAGGCCTAGGCTATTTTGACATTTAATGCAATGTCACGGTCTTCATCTTGAAGATACTAGTTTTATATTTTAGCATATGTGCTAGTTCTGGTGAGATATTTTTCTTTCAATAGGCTAATTGATTATAGTCTAATAGTTTTTCTTCTAATAAGTAGCCTACTGTAGCTAAATGTGCTGTTTTCTGTAAATATGTATAGGCAAAATAAAGCTGTTTTTTTTCCAACACCGAATTTACCAGATGGAGCTGAACACTATTTTGAAACCACCCTAGACATTCATTCATTGAAGGTAAATGTTCGTTTTAGCGATATTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486441 lncRNA downstream 96 8671798 ~ 8672580 (-) True G423588
TU486409 lncRNA downstream 129990 8542460 ~ 8542686 (-) True G423557
TU486402 lncRNA downstream 158435 8513906 ~ 8514241 (-) True G423551
TU486380 lncRNA downstream 194012 8478182 ~ 8478664 (-) True G423529
TU486375 lncRNA downstream 198800 8473674 ~ 8473876 (-) True G423524
TU486478 lncRNA upstream 276032 8949044 ~ 8949311 (-) True G423615
TU486849 lncRNA upstream 334596 9007608 ~ 9008693 (-) False G423960
TU486850 lncRNA upstream 334596 9007608 ~ 9008693 (-) True G423960
TU486864 lncRNA upstream 364601 9037613 ~ 9098217 (-) True G423972
TU486898 lncRNA upstream 488790 9161802 ~ 9162014 (-) True G424004
CI01000304_08605819_08615439.mRNA mRNA downstream 54709 8604875 ~ 8617967 (-) True CI01000304_08605819_08615439
CI01000304_08567281_08570808.mRNA mRNA downstream 101868 8567194 ~ 8570808 (-) True CI01000304_08567281_08570808
CI01000304_08510508_08532975.mRNA mRNA downstream 139650 8510470 ~ 8533026 (-) True CI01000304_08510508_08532975
CI01000304_08329095_08386362.mRNA mRNA downstream 286314 8329095 ~ 8386362 (-) True CI01000304_08329095_08386362
CI01000304_08218405_08218927.mRNA mRNA downstream 453749 8217634 ~ 8218927 (-) True CI01000304_08218405_08218927
CI01000304_08680653_08681838.mRNA mRNA upstream 7119 8680131 ~ 8682389 (-) True CI01000304_08680653_08681838
CI01000304_08692093_08712203.mRNA mRNA upstream 18947 8691959 ~ 8712203 (-) True CI01000304_08692093_08712203
CI01000304_08727439_08731885.mRNA mRNA upstream 54304 8727316 ~ 8732117 (-) True CI01000304_08727439_08731885
CI01000304_08754563_08783858.mRNA mRNA upstream 80981 8753993 ~ 8783858 (-) True CI01000304_08754563_08783858
CI01000304_08789401_08798907.mRNA mRNA upstream 116216 8789228 ~ 8799033 (-) True CI01000304_08789401_08798907
TU485601 other downstream 1019973 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 1889630 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 2041177 6631086 ~ 6631499 (-) True G422354
TU484957 other downstream 2189181 6477451 ~ 6479033 (-) False G422250
TU486232 other upstream 189211 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 895344 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 1063734 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 1480434 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 1480847 10153859 ~ 10164330 (-) True G424458

Expression Profile