RNA id: TU487428


Basic Information

Item Value
RNA id TU487428
length 4305
RNA type TUCP
GC content 0.40
exon number 2
gene id G424458
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10153446 ~ 10164330 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGACGTCAACGAGCCATCTTTGTTCCCCTAATCCGAGCATCTATTTTTTATGTGTACATAGTGACAGGAGCGAGTAGCGGTAGAGCGCCCTTATTATAAAAGGAATAATAGCGAGGCGCGGCACATCGGCGGAAGGAAATAAATACAAACCTTAAAAATATACAAGGAATACCTCTTTGCTGGAATAACCTGGAGAGTGCATTATTTATCCCGGAGACGGGGAGAAACGCCTGAAGCAGCGCGTTCATCCGCACACTTCTTGTAGACGCACATAAAACCAGGTTTAAAATGTCTGCCCCAGCCCCTGCCGGAGCCCCTGCTGCAGAAGGAGGTAACCAGCCTCCCCCTAACCTCACCAGCAACCGTCGCTTACAGCAGACACAGGCTCAAGTGGATGAGGTGGTGGACATTATGCGTGTGAACGTGGACAAGGTTCTGGAGAGGGACCAGAAGCTGTCAGAACTGGATGATCGGGCTGATGCCCTGCAGGCTGGAGCCTCACAGTTCGAGACCAGTGCCGCCAAGCTCAAGAATAAATACTGGTGGAAGAACGCCAAGATGATGATTATCCTGGGGGTGATATGTGTGATTGTCCTCATCATAATCATTGTGTACTTCAGCACCTAAAGCGCAATGTTCCTACCCCACTCTGAGCTCACGAACGCCCAATTCCAAGCCACAGAGAAATCCCTCCCAAAAAAAGATGAGAAAAACGACTCCTCACAACAATCAAATTATTTGCCCTCAAAGAGTCTAAATCCGCCCCTTCCTGAGCCCTCTTGCCCCCTGCCTCCACTGCCTCACAGCTGGGCCCCTGTCACTCCTCGTTCGTCCTGTCCGTGAGTGTGTGGCCATGTGTCCTCTGTAAATACCTCCGGCTTTTCTGAAATACTGTTCATACTCGAAACTCCTGATTACTTGTGGCAATGACAACCGATAAAAAAAGAAATTACAACCCTTAAAATACGATAAGATTATACAGTATATATTCCAAATGTTCTTTGTAGAGTTTTATTCTGATATAATGGTTTTTTGTAGTTTGTGTGTGAGTGTGCATTTGTATATTTTTTTAAGTTTTGTAAGACTTATTTTGCTTCAGGTTTAAACTACTGCCTCTTAAACTGGATGTTTGTATCTTGCACGCTCTATTACACTCTTTCTTGCTCACTGAGTATTGGTGTATTTTTGCACAAGCGATAGACTCCCTTAACCGAGGCACTAAATCAATATCCCCAAATTTTCCCTTTGTCACATCCACTCTATCTCAGACCTACACGTTGCCCTCAACCCCCTTTCTTTCTTCCTTTCTTTCTTTCTTTCGATCTTTCTTTCTTACCAACTGTACCTACTCTATTAGTGAACTGCCACAACAGACTGGACCAATGACTGTAGATGTTTATCTTAATTTGATGTCTTTAGTGTCTTATCTCTTAAACATTCCTTAATAGCAGTGTAGAATTATGCTGTCTATCAAACAGAGTAAGTGTATTTATCTTAAAGAATTCCAAAACAGGTCTTAAACAACCACAAGTACTTGTAACGCAGTCAAACTATGTTTTGACATGGATGGCGAAGTAATTAATCGCACAAAAAAAAAAAATCACATAGTTCAATTGCGCTGTAAGTGATACGAAACAAAACGAAAAACTGCCTGATTCATTCTGCTGGTAAAGATTTTCAAGGCCAGAGAGTCTCCATACAAAGTGTGGGGGTGGGACTGATTGAAAAGGGGAAATAGTATCATGCACAAAAAGCTTGTTTTCGATGTCGCTTTTTAACTGATTAGACTGCAGGTCCGACTGGGAGAGAACCATACGCTGTTACTTCCTCGCAGCAGAACTACTGCCAAACCGATGCACGAGTTCATCTGTCTGAAAGCACACAGGTTGATTTTACCACTTCAGCGTGAGCTAGTTTCAACAGCTGTGGTTCTCTCTCTTATATCTAGATACTGCCTTTTTATTTAGCCTTTTAATTTTAGAAATAGATTTGTAAATTATATTTTTGCGTGTGAAGCAGGCAGGAAAGGGACCAAGTTGTTTCAGGACTTGACGCTGCTGCCGTGTGCACAGCGAGCACCTTTGTGTCCCTCGCTATTATCCACCTCTCTGTGTGCCTGTTTGTTGAGTTCAGCTGTAGTTTACACACTGCCAAGCACCTGAGGGGGACGTTTTTTTTCTTTTTGTGTTTTTTTTTTTTTCACCGTGCCCTTCCCGGTTTGCTCTCGCTCCATCAGCATCACCCTTCAGTCTCATCCGCCCAATCTGTCGACAAAAGGCAAGCCAGGCGTGAAGTGTGTGTCTGCACGTGAACACCTCCCCCCCCACCATCTTGTTTCCCAGTTAGCGCCATTAGCGTTCCTCCTTTCACACTTTGATTCTGCCTCTAGCTGCCCGTCGAGTTTGTGTGTGTGGAGTATTTCGGCTTCATCCTGACAGATTAGGCTGCTTAGACCTCTGCAGGTAAAGAAAGGCTGTTCCCATAGCAACTTAGGGGGGACGGCATAGATTAGCTGATTGATTGTGACAGGAGGCGGAGCCACTGGTTTGAGGGGGTGGGGCTAGAGAAATTATTCCACTGGTGTGTTTTTACATTTCGTGGTAATCATCTGCATGGAAAAGCCTGATGATTAGAGTAGAATTATCTATAATATTTAACGTTTCTGATCAAACAAACTGCTTGTTTCATTTTCATTTCATTCATTTTTCTTCTTTAAAAGGAGATAGCCTTAGTTCATTTCAATTTTTTCATTTCTGCATGCTCATTCACTCCTTTGTCCCACTCACGTTGAGATATTTTAATGAAAAATGACCAAAGACCATATTATATCTCGCTTATACTGCCAACTGCCATCAAAAACAGGTTAAGAGACAGGATTTCCCCAGATCTCTGGTTTTTAAAAGCCTCATCCAGCAAAAGTAATCAAGAAATCCCCTATCTCTCTGCATATTTTTCAGGTCTGTGTTTATTTTACTTGAATATTTAGTATTGATAAACACGTGGCAGTGATTGCTAAAAGGATAAGGAATTTGAAACCACAATCCGATGGAGAAATCCCTAGGCCTGATATCTGAAACAGTGATAGCACAACTTCTCCTTTAGGTCTGTATATGTAATGCTGAGTATGAAAAATGAAACTATTTCTTTGTAGCTGTTTAAGAAGAAAAAAGACAAAAAAAAAAAAAAAAAATCTGTATCGTTTCGTGTTGTAGTGTGGGCTTCATCTGGGGGAAGGGGGTTCTTTTTTTAGATTTTACATTTAAGGCATAAACAATCTGGAATTAGAATAAGATGTTGATAATATTAAAATAGAGAATCTCTATATTATATTAGGGCAAATATAATGATTTTTCTCCCGGGGGTTGTAAACATTTTAAAGGGATCTGTAACTAATAAACAACAAGCATTGGGGTAGGACTCAAACATGACAAATTAATCAAAGCGTTTGAAAACACAAATTTAAAGGATTCTAATAGGAGACTACTACAAATAATGTATGTGCTATTCTGTTTTTCTTTGTGTGAGTGTATGAAGACATTTTCTTTTGTCTTGGCACTTACTCTATGTTTTGTTCAAAACCGTGTGGGTTGAGAGAGATGGTGGGAGTAGTTTTGTCACACCAGCCTGTTAAAGATGCTGTGTCTTCTTTTTATTGGGAGGGAACCAATGAAGACGCAGAACTTTACTGGACAGTGATTTCTCCATTACTCACATCATGCAGTTGTTTAGTCTTCAGTTACTTACTTTATTTTAAGCAGAAATTAGTTAAGGCTTCACAGTGGTGCTCTTTGGCACAGCTTCATTGTGCTTAGTCAGGAGAGGGTGATTTTTTTTCTATTATTTAAGTTTAAATACAAGAACAGTGACCTAAGATATCAGAGTAATACTGGAAATTGAACCCTGCCTTATTATAGGTTAGCGTGTCAAGAGTTTTTCAGAAAGCTTGTACAGACTGAAATATCAACTTTAATCGGTTGCTATTAGTTGATGTTTTAAATGAAAAGTTATGGAGTTTTACAAGAGTTTAAATCATTTTTGAAGGTTTTTGGGACTGAATAAAAACTGCATAAAGCAGAATTCAAAGGGGTCGATTCCATAGAGCTTCGTGGAGGTCTAGAAACGCATTGAACCAAGAGCCAAGTTGCTGTATTGATAACAATTTGTGTTTCATTTGTTTATTTATTTGATTTATGGAGGTTTGTTTGGGGAGGAAAGGTTTAAGATTAGTATTAACCCTTTTTGTCTGGCCTCTTTGGAGGGACTAGGCCGGAGGATCATGGGTAATGCGATCTTCACAATCTTATTTTATGTTGTTATATATTTTTTTTTTTTTATTTATTTGTGTCATAAGTTATAGTGGACTGCATATTAAACAGAACGAAGTACATTGTAACAGGAAACCATTTGGTAACCAGACATACATGAATTCAGTTGTAGAGTAAATCTGTTAATGTCTATTATATGGATGAACATCTTGGGAAAATATATATATAAATATACATATATATATTGCAAAAAATGACAGTTATGATGACCTGTGTTTATTGTTCCAAGTTAGAAATTAAAATGTGTGTGTGTTTGAAAACAATGACAACATAAAAAAATAAATATATAATAAAAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487451 lncRNA downstream 63219 10082398 ~ 10090227 (-) True G424474
TU487459 lncRNA downstream 90694 10062265 ~ 10062752 (-) True G424482
TU487416 lncRNA downstream 117378 10033594 ~ 10036068 (-) True G424448
TU487386 lncRNA downstream 175960 9977259 ~ 9977486 (-) True G424418
TU487170 lncRNA downstream 312919 9840107 ~ 9840527 (-) True G424239
TU487481 lncRNA upstream 9269 10173599 ~ 10174147 (-) False G424504
TU487482 lncRNA upstream 9269 10173599 ~ 10173855 (-) True G424504
TU487516 lncRNA upstream 87891 10252221 ~ 10252462 (-) True G424535
TU487796 lncRNA upstream 97741 10262071 ~ 10262340 (-) True G424797
TU487826 lncRNA upstream 107593 10271923 ~ 10272411 (-) True G424823
CI01000304_10137324_10147067.mRNA mRNA downstream 3915 10137040 ~ 10149531 (-) True CI01000304_10137324_10147067
CI01000304_10123588_10128249.mRNA mRNA downstream 25197 10123407 ~ 10128249 (-) True CI01000304_10123588_10128249
CI01000304_10119297_10119833.mRNA mRNA downstream 33613 10118890 ~ 10119833 (-) True CI01000304_10119297_10119833
CI01000304_09955649_09957311.mRNA mRNA downstream 194139 9955554 ~ 9959307 (-) True CI01000304_09955649_09957311
CI01000304_09949821_09951564.mRNA mRNA downstream 200189 9949165 ~ 9953257 (-) True CI01000304_09949821_09951564
CI01000304_10167646_10169639.mRNA mRNA upstream 1857 10166187 ~ 10169639 (-) True CI01000304_10167646_10169639
CI01000304_10187728_10188909.mRNA mRNA upstream 22941 10187271 ~ 10188909 (-) True CI01000304_10187728_10188909
CI01000304_10191594_10192287.mRNA mRNA upstream 27068 10191398 ~ 10192357 (-) False CI01000304_10191594_10192287
CI01000304_10209150_10210418.mRNA mRNA upstream 44305 10208635 ~ 10210891 (-) True CI01000304_10209150_10210418
CI01000304_10220812_10226103.mRNA mRNA upstream 55259 10219589 ~ 10226103 (-) True CI01000304_10220812_10226103
TU487077 other downstream 413975 9739353 ~ 9739471 (-) True G424168
TU487066 other downstream 584412 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 1288150 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 2500743 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 3370400 6744679 ~ 6783046 (-) True G422378
TU487433 other upstream 26244 10192696 ~ 10192895 (-) True G424459
TU487810 other upstream 280025 10444355 ~ 10542665 (-) True G424808
TU488239 other upstream 1182690 11354883 ~ 11357146 (-) False G425194
TU488240 other upstream 1182690 11354883 ~ 11357146 (-) True G425194
TU488688 other upstream 1704347 11868677 ~ 11872906 (-) True G425580

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005889 True 3814 lncRNA 0.37 2 NC_007121.7 22834414 ~ 22838481 (+)
grasscarp (Ctenopharyngodon idella) TU310087 True 206 lncRNA 0.40 1 CI01000069 53293 ~ 53498 (+)
striped catfish (Pangasianodon hypophthalmus) TU310087 False 2702 lncRNA 0.38 3 NC_047611.1 1070967 ~ 1112393 (-)
mexican tetra (Astyanax mexicanus) TU444976 False 4703 TUCP 0.41 8 NW_019172894.1 35960 ~ 46981 (+)