CI01000304_10220812_10226103


Basic Information

Item Value
gene id CI01000304_10220812_10226103
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10219589 ~ 10226103 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_10220812_10226103.mRNA
TTTTCGGAGAATGGAGCAGAGGAGTAGAGCTCGTGTAGCGGTGATAGGGGCTGGGCCGGCAGGGCTTTGCGCTGCTCGACACATTCTGTCAAGGCCCGAGACCTTTGATCCACCCGTGGTGTATGAAATGACTGATCATTTGGGTGGGACCTGGTTCTATGAGGAAAGAGTTGGCACATATGACAATGGGTATCCCATCCACAGCAGTATGTATAGGGACCTCAGAACCAATTTGCCTAAGGAGGTTATGATGTTCCCTGATTTTCCCTTTGATGACCACCTGCCTTCTTTTTTGCACCATACATCGGTTCAGCGGTATTTGGAAAAATACTGTGAGAGTTATGATATTGCCCGTCATATCAAGTTCAACACCGCGGTGGAAAAGGTGAAGCCCGTCTCCATGGAGACGGAGACAGGGGGAGCTGTGACGTGGGAGGTAATTTCGCACCGCACATGTGGAGACCGGAACACGCAGACATTCGACTCAGTGTTCGTCTGCAACGGGCATTACTCCGACCCCCACCTGCCCTACATTCCTGGAATAGAGCATTTTAAAGGGAAAGTCTTACACAGTCACTCGTACCGCTGTCCAGAGGCCTTTGCCAACAAGTCCGTCGTGGTCTTGGGGGCCAGAGCATCTGGTGTGGACATTTCCTTTGAGTTAGTCCAAGTTAATGCCCAGGTGATTCTAAGTCATAACACACCAAATATGTCCTTACCTCTGCCTCTGGGTATCCGGCAGGCTACCTCTGTTGTTGGGGTCTTGGAGGATGGATCTTTACAGTTCCAGGATGGATCAGTGACCCAGGCTGATATTCTTCTGTTCTGTACAGGATACAACTTTAACTTCCCTTTCCTTTGTCCATCAGAGCTAGGCCTGGACGTACAGGATCTTTTTGTGACTCCGCTCTATAAGTACTTGCTGCCTCCTGGCTTCCCGTCGATTTTTTTTATTGGCATTTGCAAAATTATTTGCCCTTTCATACATTTTGACTGCCAGGTTCAGTTTGCTCTAGCTGTCCTGGAGGGTTCGGTAAAGCTGCCCACTCAGGAAGAGATGGAGAAGGAGGTGCGGAGAGAGATGCAAAAAAAACTAGACACAGGTGTGCAGGTGAAGCACTTGCTCAATTTGGACAAGGATCAGTGGGATTATTACCTGGATCTGGCCAGGGTAGCCCAATTCACACCCCCTCAGCCAGTGTTTAAGAGTCTATATGAAGAGGTGGGCAGGCAGAGGAAGAAAGACCCACAGAAATACAGACAGATCAACTATAGGCTCATTGATGCCACACAGTGGGAGCTTTTGGAAGCTTCACCAGAACAGACTGATTGAGTTTAGCTAGTTTGAGGACAAATGAATTGCATTACCGTTTTGCTGTCATATCTGAGATGCTTTCTTTTCGTAGGAAAACTGAATGAAGAAAATTCTTGTAATAATTCTTAATTATACAAAAATGTAGCGATCAAAGTTAATATACACTCACTGGCCACTTTATTAGGTACACCTGTTCAGCTGCTCCATGATGCAAATATCTAATAAGGCAATCATGTGGCATCTACTCAGTGCATTTAGGCATGTAGACATGGTCAAGATGATCTGCTGAAGTTCAAACTGAGCATCAGAATGGTGAAGAAAAGTGAATTTGAACTTGGCATGGTTGTTGGAGCCAGATGGGCTGGTCTGAGTATTTCAGAAACTGCTGATCGACTGTAATTTCCATGCACAGCCATTTATAGGGTTTACAGAGAACGGTCCGAAAAAGAGAAAATATCCAGTGAGCGGCAGTTCTGTGGACGAAAATGTCTTGTTGATGCCAGAGGTCAGAGTAGAACAGCCAGACTGGTTAGAGCTGATAGAAAGGCAACACTAATTCAAATAACCACTCGTTACAACCGAGGTCTGCAGAAGAGCATCTCTGAATGCAAACGCATCAAACCTTGAAGCAGATGGGCTACAGCAGCAGAAGACCACACCGAGTGCCACTCCTGCCAGCTAAGAACAGGAAATTGAGGCTACAACTCGCACGGGCTCAACAAAATTGGACAATAGAAGATTGGAAAAACGTTGCCTGGCCTGATCAGTCTTGATTTCTGTTGCAACATTCAGATGGTACGGTCAGAGTTTGTCATAAACAACATGAAAGCATGGATCCATCCTTGCTTGTATCAACGGTTCAGGCTGGTGGCACACTTTGGGCCACTTAGTACCGATTGAGCATTGTTTAAATGCCACAGCCTTCCTGAGTATTGTTGTGGACCATGTCCATCCCTTTATTACCACAGTGTACCCATCTTCTGATGGCTACTTCCAGCAGGATAATGTGCCATGTCTCAAAGCTCAAATCATCTCAAGCTGGTTTCATCATGTCAATATGGACCAGAATCTTTGAGGAATGTTTTCACCACCTGGTTGAATTTATGCCACAAAGAATTAAGGCAGTTCTGAAGGCAAAATGGTGTCCAACCTTATACTAGCAAGGTGTACCTAATAGAGTGGCCGGTGGGTGTGTGTTATATTTTTCCTTTATTATTAGCATAACAAATATAAGAAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_10220812_10226103.mRNA True 2556 mRNA 0.46 7 10219589 10226103

Neighbor

gene id symbol gene type direction distance location
CI01000304_10209150_10210418 NA coding downstream 8698 10208635 ~ 10210891 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK coding downstream 27232 10190574 ~ 10192357 (-)
CI01000304_10187728_10188909 NA coding downstream 30680 10187271 ~ 10188909 (-)
CI01000304_10167646_10169639 NA coding downstream 49950 10166187 ~ 10169639 (-)
CI01000304_10160458_10161768 VAMP2 coding downstream 55827 10160458 ~ 10163762 (-)
CI01000304_10284509_10291314 NLE1, NLE1.S coding upstream 58406 10284509 ~ 10291314 (-)
CI01000304_10350748_10388571 CADM2A coding upstream 123766 10349869 ~ 10388602 (-)
CI01000304_10812673_10812980 NA coding upstream 586430 10812533 ~ 10815238 (-)
CI01000304_11065581_11077156 NA coding upstream 839136 11065239 ~ 11077156 (-)
CI01000304_11083948_11091592 PITPNAB, PITPNA coding upstream 857735 11083838 ~ 11091592 (-)
G424504 NA non-coding downstream 45442 10173599 ~ 10174147 (-)
G424496 NA non-coding downstream 59228 10159648 ~ 10160361 (-)
G424474 NA non-coding downstream 129362 10082398 ~ 10090227 (-)
G424482 NA non-coding downstream 156837 10062265 ~ 10062752 (-)
G424448 NA non-coding downstream 183521 10033594 ~ 10036068 (-)
G424535 NA non-coding upstream 26118 10252221 ~ 10252462 (-)
G424797 NA non-coding upstream 35968 10262071 ~ 10262340 (-)
G424823 NA non-coding upstream 45820 10271923 ~ 10272411 (-)
G424829 NA non-coding upstream 91199 10317302 ~ 10317531 (-)
G424830 NA non-coding upstream 91508 10317611 ~ 10318093 (-)
CI01000304_09737662_09738777 NA other downstream 480118 9736746 ~ 9738777 (-)
CI01000304_09566730_09575706 NA other downstream 650555 9566730 ~ 9575706 (-)
G423386 NA other downstream 1354293 8862223 ~ 8865296 (-)
G424808 NA other upstream 218252 10444355 ~ 10542665 (-)
CI01000304_11338304_11348212 ILK other upstream 1120917 11338019 ~ 11348212 (-)
G425580 NA other upstream 1642574 11868677 ~ 11872906 (-)
G426106 NA other upstream 2110598 12336701 ~ 12340228 (-)
CI01000304_12559311_12559998 NA other upstream 2332751 12558854 ~ 12560135 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location