RNA id: CI01000304_10220812_10226103.mRNA


Basic Information

Item Value
RNA id CI01000304_10220812_10226103.mRNA
length 2556
RNA type mRNA
GC content 0.46
exon number 7
gene id CI01000304_10220812_10226103
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10219589 ~ 10226103 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTCGGAGAATGGAGCAGAGGAGTAGAGCTCGTGTAGCGGTGATAGGGGCTGGGCCGGCAGGGCTTTGCGCTGCTCGACACATTCTGTCAAGGCCCGAGACCTTTGATCCACCCGTGGTGTATGAAATGACTGATCATTTGGGTGGGACCTGGTTCTATGAGGAAAGAGTTGGCACATATGACAATGGGTATCCCATCCACAGCAGTATGTATAGGGACCTCAGAACCAATTTGCCTAAGGAGGTTATGATGTTCCCTGATTTTCCCTTTGATGACCACCTGCCTTCTTTTTTGCACCATACATCGGTTCAGCGGTATTTGGAAAAATACTGTGAGAGTTATGATATTGCCCGTCATATCAAGTTCAACACCGCGGTGGAAAAGGTGAAGCCCGTCTCCATGGAGACGGAGACAGGGGGAGCTGTGACGTGGGAGGTAATTTCGCACCGCACATGTGGAGACCGGAACACGCAGACATTCGACTCAGTGTTCGTCTGCAACGGGCATTACTCCGACCCCCACCTGCCCTACATTCCTGGAATAGAGCATTTTAAAGGGAAAGTCTTACACAGTCACTCGTACCGCTGTCCAGAGGCCTTTGCCAACAAGTCCGTCGTGGTCTTGGGGGCCAGAGCATCTGGTGTGGACATTTCCTTTGAGTTAGTCCAAGTTAATGCCCAGGTGATTCTAAGTCATAACACACCAAATATGTCCTTACCTCTGCCTCTGGGTATCCGGCAGGCTACCTCTGTTGTTGGGGTCTTGGAGGATGGATCTTTACAGTTCCAGGATGGATCAGTGACCCAGGCTGATATTCTTCTGTTCTGTACAGGATACAACTTTAACTTCCCTTTCCTTTGTCCATCAGAGCTAGGCCTGGACGTACAGGATCTTTTTGTGACTCCGCTCTATAAGTACTTGCTGCCTCCTGGCTTCCCGTCGATTTTTTTTATTGGCATTTGCAAAATTATTTGCCCTTTCATACATTTTGACTGCCAGGTTCAGTTTGCTCTAGCTGTCCTGGAGGGTTCGGTAAAGCTGCCCACTCAGGAAGAGATGGAGAAGGAGGTGCGGAGAGAGATGCAAAAAAAACTAGACACAGGTGTGCAGGTGAAGCACTTGCTCAATTTGGACAAGGATCAGTGGGATTATTACCTGGATCTGGCCAGGGTAGCCCAATTCACACCCCCTCAGCCAGTGTTTAAGAGTCTATATGAAGAGGTGGGCAGGCAGAGGAAGAAAGACCCACAGAAATACAGACAGATCAACTATAGGCTCATTGATGCCACACAGTGGGAGCTTTTGGAAGCTTCACCAGAACAGACTGATTGAGTTTAGCTAGTTTGAGGACAAATGAATTGCATTACCGTTTTGCTGTCATATCTGAGATGCTTTCTTTTCGTAGGAAAACTGAATGAAGAAAATTCTTGTAATAATTCTTAATTATACAAAAATGTAGCGATCAAAGTTAATATACACTCACTGGCCACTTTATTAGGTACACCTGTTCAGCTGCTCCATGATGCAAATATCTAATAAGGCAATCATGTGGCATCTACTCAGTGCATTTAGGCATGTAGACATGGTCAAGATGATCTGCTGAAGTTCAAACTGAGCATCAGAATGGTGAAGAAAAGTGAATTTGAACTTGGCATGGTTGTTGGAGCCAGATGGGCTGGTCTGAGTATTTCAGAAACTGCTGATCGACTGTAATTTCCATGCACAGCCATTTATAGGGTTTACAGAGAACGGTCCGAAAAAGAGAAAATATCCAGTGAGCGGCAGTTCTGTGGACGAAAATGTCTTGTTGATGCCAGAGGTCAGAGTAGAACAGCCAGACTGGTTAGAGCTGATAGAAAGGCAACACTAATTCAAATAACCACTCGTTACAACCGAGGTCTGCAGAAGAGCATCTCTGAATGCAAACGCATCAAACCTTGAAGCAGATGGGCTACAGCAGCAGAAGACCACACCGAGTGCCACTCCTGCCAGCTAAGAACAGGAAATTGAGGCTACAACTCGCACGGGCTCAACAAAATTGGACAATAGAAGATTGGAAAAACGTTGCCTGGCCTGATCAGTCTTGATTTCTGTTGCAACATTCAGATGGTACGGTCAGAGTTTGTCATAAACAACATGAAAGCATGGATCCATCCTTGCTTGTATCAACGGTTCAGGCTGGTGGCACACTTTGGGCCACTTAGTACCGATTGAGCATTGTTTAAATGCCACAGCCTTCCTGAGTATTGTTGTGGACCATGTCCATCCCTTTATTACCACAGTGTACCCATCTTCTGATGGCTACTTCCAGCAGGATAATGTGCCATGTCTCAAAGCTCAAATCATCTCAAGCTGGTTTCATCATGTCAATATGGACCAGAATCTTTGAGGAATGTTTTCACCACCTGGTTGAATTTATGCCACAAAGAATTAAGGCAGTTCTGAAGGCAAAATGGTGTCCAACCTTATACTAGCAAGGTGTACCTAATAGAGTGGCCGGTGGGTGTGTGTTATATTTTTCCTTTATTATTAGCATAACAAATATAAGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487481 lncRNA downstream 45442 10173599 ~ 10174147 (-) False G424504
TU487482 lncRNA downstream 45734 10173599 ~ 10173855 (-) True G424504
TU487473 lncRNA downstream 59228 10159648 ~ 10160361 (-) True G424496
TU487451 lncRNA downstream 129362 10082398 ~ 10090227 (-) True G424474
TU487459 lncRNA downstream 156837 10062265 ~ 10062752 (-) True G424482
TU487516 lncRNA upstream 26118 10252221 ~ 10252462 (-) True G424535
TU487796 lncRNA upstream 35968 10262071 ~ 10262340 (-) True G424797
TU487826 lncRNA upstream 45820 10271923 ~ 10272411 (-) True G424823
TU487832 lncRNA upstream 91199 10317302 ~ 10317531 (-) True G424829
TU487833 lncRNA upstream 91508 10317611 ~ 10318093 (-) True G424830
CI01000304_10209150_10210418.mRNA mRNA downstream 8698 10208635 ~ 10210891 (-) True CI01000304_10209150_10210418
CI01000304_10191594_10192287.mRNA mRNA downstream 27232 10191398 ~ 10192357 (-) False CI01000304_10191594_10192287
CI01000304_10187728_10188909.mRNA mRNA downstream 30680 10187271 ~ 10188909 (-) True CI01000304_10187728_10188909
CI01000304_10167646_10169639.mRNA mRNA downstream 49950 10166187 ~ 10169639 (-) True CI01000304_10167646_10169639
CI01000304_10160458_10161768.mRNA mRNA downstream 55827 10160458 ~ 10163762 (-) False CI01000304_10160458_10161768
CI01000304_10284509_10291314.mRNA mRNA upstream 58406 10284509 ~ 10291314 (-) True CI01000304_10284509_10291314
CI01000304_10350748_10388571.mRNA mRNA upstream 123766 10349869 ~ 10388602 (-) True CI01000304_10350748_10388571
CI01000304_10812673_10812980.mRNA mRNA upstream 586430 10812533 ~ 10815238 (-) False CI01000304_10812673_10812980
CI01000304_11065581_11077156.mRNA mRNA upstream 839136 11065239 ~ 11077156 (-) True CI01000304_11065581_11077156
CI01000304_11083948_11091592.mRNA mRNA upstream 857735 11083838 ~ 11091592 (-) True CI01000304_11083948_11091592
TU487433 other downstream 26694 10192696 ~ 10192895 (-) True G424459
TU487428 other downstream 55259 10153446 ~ 10164330 (-) False G424458
TU487429 other downstream 55259 10153859 ~ 10164330 (-) True G424458
TU487077 other downstream 480118 9739353 ~ 9739471 (-) True G424168
TU487066 other downstream 650555 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487810 other upstream 218252 10444355 ~ 10542665 (-) True G424808
TU488239 other upstream 1120917 11354883 ~ 11357146 (-) False G425194
TU488240 other upstream 1120917 11354883 ~ 11357146 (-) True G425194
TU488688 other upstream 1642574 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 2110598 12336701 ~ 12340228 (-) True G426106

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005110 False 1983 mRNA 0.47 7 NC_007121.7 22960380 ~ 22970723 (-)