RNA id: TU487433


Basic Information

Item Value
RNA id TU487433
length 200
RNA type TUCP
GC content 0.38
exon number 1
gene id G424459
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10192696 ~ 10192895 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGCCGATATACATCCGGTCGTTTGGGTCGAGAGAAGGATAGAGGCAGGCTATCATCCCGATTGGATGTAGCATCATTTTTCCAGTTTTGAGAGGAAGAATCTGTGGGCGATCTCGGATAAAATGCCGTCGCTTTTATTCTGTGGGCCCAAATTGGCAGCCTGTGGGATCGTGTTAAGCATCTGGGGTGTCGTTATGCTGTCAATGTTGGGAATCTTCTTCAGTGCAAAATCTGCTGTGCTGATCGAAGATGTTCCCTTTACTGAGGAAGACATCCGTGATGACAAGAATCCACCACAGACAATTTACGGACTCTACAACCAAGTTGGGATCAACTGCTTCATTGCTGCTGCCATCTACGTAGGTGTTGGCGCAGTGTCTCTGTGTCAAGTTCGCCTTAACAAGCGCCAGGAGTACATGGTCACATAAACCCAGACCATTTCCAAATTCAACTCCAATTATTCCTAATTATTTATTTTTTAAAAGACTTCTCAACAATCTAGAAGAAGATTTTGCTTTGTTATATTGTCTGAAATTGATATATTTGCCAGTTAATCTTTGGCTCAAAATTTAAATACTAGATATATAATGTTATGAAGAAAAAGTGTCCAAAACATACAATAAACAGGCACAAATACATGCTGTGTGCATATATATGCATGTCATGTGTTGTTAAATTCCAGAAATATTCAGAACATTATGGGAAGGAACTTTGACTCCACATTTTCCATCATATAAATAAGCAAAACAAGCCGAAGGTCTTCACTTTGATGGTTGTCTTCTGATGAATAAGCTATAAGACACCATAAAACACTATGGATCCAGATGTTAGTAGCTGGTGTTTATGTTGAATGTGTGTGTATGGTGGACATTTTTTGAATTCCAATATTTAAATGTTTGTGTGGTAATATAAATGTCTATTATTTTATTGATGTACACCCTGCAAACCTTGTGCTGTGTACTTGATATCACAACAGTAATGAACAATGCAAGATAAGTCTTATGTTCCCTTCAATAAAATACTAATGAAAAAATTTTTTTTTATTGTTGTTGTTTTGTTTTTGTCACAACTATTTAAAAAAAACATTAACAGAAACTATGTAACATTTTCTCAACAAGACAAAATCGTTGGTGCTATTACAGCACAGGGAAGATATTCAAAGCAAATCACTAGGTTTGTCATACAAGATTTCCTTAGACTATGGAGAATAAAAAGTGTTGTTTGTGGATGGTATTCAGACAGGTCTTGAAACATGTAGACACTTGTGAAGTCGGCTAGCAGATATTACAAAGAAATAGTCCATTTAATAAGTCTTTACGTCTGTGGATCAAGCATCATCTCACAGGTACGTCCCAGCTCTCCCAGTTTGACACGGGCATATTCTGCACGGTTTAAAGCCATCTGACAGTCCTTTCTGGCTGAGTATGTTGATCCCTCATGAGGCTGAC

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K19770 RNASEK; ribonuclease kappa

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487481 lncRNA downstream 16427 10173599 ~ 10174147 (-) False G424504
TU487482 lncRNA downstream 16719 10173599 ~ 10173855 (-) True G424504
TU487473 lncRNA downstream 30213 10159648 ~ 10160361 (-) True G424496
TU487451 lncRNA downstream 100347 10082398 ~ 10090227 (-) True G424474
TU487459 lncRNA downstream 127822 10062265 ~ 10062752 (-) True G424482
TU487516 lncRNA upstream 59326 10252221 ~ 10252462 (-) True G424535
TU487796 lncRNA upstream 69176 10262071 ~ 10262340 (-) True G424797
TU487826 lncRNA upstream 79028 10271923 ~ 10272411 (-) True G424823
TU487832 lncRNA upstream 124407 10317302 ~ 10317531 (-) True G424829
TU487833 lncRNA upstream 124716 10317611 ~ 10318093 (-) True G424830
CI01000304_10187728_10188909.mRNA mRNA downstream 1665 10187271 ~ 10188909 (-) True CI01000304_10187728_10188909
CI01000304_10167646_10169639.mRNA mRNA downstream 20935 10166187 ~ 10169639 (-) True CI01000304_10167646_10169639
CI01000304_10160458_10161768.mRNA mRNA downstream 26812 10160458 ~ 10163762 (-) False CI01000304_10160458_10161768
CI01000304_10137324_10147067.mRNA mRNA downstream 41043 10137040 ~ 10149531 (-) True CI01000304_10137324_10147067
CI01000304_10123588_10128249.mRNA mRNA downstream 62325 10123407 ~ 10128249 (-) True CI01000304_10123588_10128249
CI01000304_10209150_10210418.mRNA mRNA upstream 15740 10208635 ~ 10210891 (-) True CI01000304_10209150_10210418
CI01000304_10220812_10226103.mRNA mRNA upstream 26694 10219589 ~ 10226103 (-) True CI01000304_10220812_10226103
CI01000304_10284509_10291314.mRNA mRNA upstream 91614 10284509 ~ 10291314 (-) True CI01000304_10284509_10291314
CI01000304_10350748_10388571.mRNA mRNA upstream 156974 10349869 ~ 10388602 (-) True CI01000304_10350748_10388571
CI01000304_10812673_10812980.mRNA mRNA upstream 619638 10812533 ~ 10815238 (-) False CI01000304_10812673_10812980
TU487428 other downstream 26244 10153446 ~ 10164330 (-) False G424458
TU487429 other downstream 26244 10153859 ~ 10164330 (-) True G424458
TU487077 other downstream 451103 9739353 ~ 9739471 (-) True G424168
TU487066 other downstream 621540 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 1325278 8862223 ~ 8865296 (-) True G423386
TU487810 other upstream 251460 10444355 ~ 10542665 (-) True G424808
TU488239 other upstream 1154125 11354883 ~ 11357146 (-) False G425194
TU488240 other upstream 1154125 11354883 ~ 11357146 (-) True G425194
TU488688 other upstream 1675782 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 2143806 12336701 ~ 12340228 (-) True G426106

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU221271 False 480 TUCP 0.55 3 NC_053127.1 4149841 ~ 4153463 (-)
tiger barb (Puntius tetrazona) TU112044 False 641 TUCP 0.42 3 NC_056708.1 7883906 ~ 7885482 (-)