CI01000304_11083948_11091592 (PITPNAB, PITPNA)


Basic Information

Item Value
gene id CI01000304_11083948_11091592
gene name PITPNAB, PITPNA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11083838 ~ 11091592 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_11083948_11091592.mRNA
TATCAGGTCGGGCAGCTGTACTCCGTAGCGGAGGCCAGTAAGAATGAGACGGGTGGAGGAGAGGGCGTGGAGGTGTTGAAGAACGAACCCTATGAGAAAGATGGAGAGAAGGGGCAGTACACACACAAAATCTACCACCTGCAGAGAAAAACATATGTTCCAGCCATCTGTCCATGTCAAGGTGTCTACAGATACAGTAACACTGTAAATGAGTATATGAAAGAAAACTTCCTCATCAAGATCGAGACGTGGCACAAACCTGACATGGGACAGCAGGATAATGTTCACGGTTTAGACCCAGACACCTGGAAGAAGGTGGATGTGGTGTACATAGACATCGCAGACCGGAGTCAGGTGGAGCCAAAGGACTATAAACCAGAGGAAGACCCCACTAAGTTTAAGTCTGTAAAAACAGGAAGAGGGCCGCTCGGTCCGGATTGGAAGAAAGAACTACCTAAAAAGACAGACTGCCCACACATGTGTGCCTACAAACTGGTTACTGTCAAGTTCAAGTGGTGGGGCCTGCAAAACAAAGTGGAAAACTTCATTCAAAAGCAAGAGAAGCGTTTGTTCACTAATTTCCACCGGCAGCTGTTCTGTTGGATTGATAAATGGATCGAGCTGAACATGGATGACATCCGCAGAATGGAGGAAGAGACCAGGAGGGAACTGGATGAGATGAGAGTGAAGGATCCAGTGAAAGGCATGGTGGCTCTTGAAGACTGAGGCTGCTCTGTGTTTCTGGATGCTGCTGTTCATAAAGGTAATTCACGATCTTTAGCGCCCCCTAATGTCATTTATCTAACACAGCAATTGAGAACTAAAAAATAATTAAA

Function

symbol description
pitpnab Predicted to enable phospholipid binding activity and phospholipid transporter activity. Predicted to act upstream of or within phospholipid transport. Predicted to be active in cytoplasm. Orthologous to human PITPNA (phosphatidylinositol transfer protein alpha).
pitpna Enables phospholipid binding activity and phospholipid transfer activity. Involved in phospholipid transport. Located in extracellular exosome.

GO:

id name namespace
GO:0006810 transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_11083948_11091592.mRNA True 836 mRNA 0.46 8 11083838 11091592

Neighbor

gene id symbol gene type direction distance location
CI01000304_11065581_11077156 NA coding downstream 6682 11065239 ~ 11077156 (-)
CI01000304_10812673_10812980 NA coding downstream 268600 10812533 ~ 10815238 (-)
CI01000304_10350748_10388571 CADM2A coding downstream 695236 10349869 ~ 10388602 (-)
CI01000304_10284509_10291314 NLE1, NLE1.S coding downstream 792524 10284509 ~ 10291314 (-)
CI01000304_10220812_10226103 NA coding downstream 857735 10219589 ~ 10226103 (-)
CI01000304_11110559_11121354 SLC43A2B coding upstream 18871 11110463 ~ 11122171 (-)
CI01000304_11124801_11135838 NA coding upstream 32565 11124157 ~ 11137342 (-)
CI01000304_11272501_11275583 STOM, STOML3B, STOML3 coding upstream 180632 11272224 ~ 11275583 (-)
CI01000304_11282245_11288087 PROSER1 coding upstream 190549 11282141 ~ 11288087 (-)
CI01000304_11304660_11306789 NA coding upstream 212968 11304560 ~ 11306871 (-)
G425104 NA non-coding downstream 82244 10934381 ~ 11001594 (-)
G424932 NA non-coding downstream 183937 10899107 ~ 10899901 (-)
G424907 NA non-coding downstream 234355 10849201 ~ 10849483 (-)
G424818 NA non-coding downstream 261189 10769715 ~ 10822649 (-)
G425126 NA non-coding upstream 45785 11137377 ~ 11137710 (-)
G425167 NA non-coding upstream 48322 11139914 ~ 11140117 (-)
G425168 NA non-coding upstream 50095 11141687 ~ 11141959 (-)
G425188 NA non-coding upstream 114030 11205622 ~ 11257296 (-)
G425190 NA non-coding upstream 114324 11205916 ~ 11251704 (-)
G424808 NA other downstream 541173 10444355 ~ 10542665 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other downstream 890943 10190574 ~ 10192357 (-)
CI01000304_10160458_10161768 VAMP2 other downstream 919508 10160458 ~ 10163762 (-)
CI01000304_09737662_09738777 NA other downstream 1344367 9736746 ~ 9738777 (-)
CI01000304_09566730_09575706 NA other downstream 1514804 9566730 ~ 9575706 (-)
CI01000304_11338304_11348212 ILK other upstream 255428 11338019 ~ 11348212 (-)
G425580 NA other upstream 777085 11868677 ~ 11872906 (-)
G426106 NA other upstream 1245109 12336701 ~ 12340228 (-)
CI01000304_12559311_12559998 NA other upstream 1467262 12558854 ~ 12560135 (-)
G426147 NA other upstream 1604406 12719497 ~ 12805926 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005527 pitpnab,LOC108410689,LOC105890453,LOC101470402,LOC100703534,LOC103045464 coding CM030142.1 CM030142.1 2157962 ~ 2170629 (+)