CI01000304_11110559_11121354 (SLC43A2B)


Basic Information

Item Value
gene id CI01000304_11110559_11121354
gene name SLC43A2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11110463 ~ 11122171 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_11110559_11121354.mRNA
AGTAAGTGCCGGTAACTGCAGGAAGAAGAGAGAGGGGGAAGAGAGAGAGCAAAGGCATCAAGGGGGAGATCACTCTGCGCTAAAAGGGTACAGAACTTGTTTGCCTTTCTCTCAAAGGTATGTCTTCTATATTTTATTTTATTAATACATTTTTTACTTATACTATTTTCTTTTGAACAAATGCAGCACATTATATGACCAGTAGGATTGTTAATTTCTAAAAGACAAAGAGGATTATTCTTTCACACACAAAGTCAGTTATTTTTCTGAGTTGCATTAGTGATGAACTTTTAATAATCCATGTGTTTGAAATACAAGTCACACTGAGATATAAATGTTACATCAGGAATTATGTGATGTTATAATGTCAGAATTCAATTTACTTTTATCTTTTTGATATTTTGAATCTAAACAATGTATAGTTATGTGAATTATGTAGTTTTGGGACCCCTCCCTGTCACTCTTCTTGCACTGTAATGCAAAAGAGCCAATTGAGTTTGAAAGAACTGGTTTTGAAAGTGATACGCATAACAAAGAAGATGTGAGTCTTTGAAGTGGCTTCAGTGGATCATTTGCACATTTTAATAAAAGTTCAAAAAGAAAAGAATAAAGAAGTGCCTGATCAACAATTTAGGAATTTCTTTATTTGAGCTCTAGTAATCCAGACTTATCATCACATGTAAACCTGGCCATTCCATTAAAATGACTCTAACACACTTCTCTCTCTTTTCATCCACAGATTGTAAGGTCTAATCCCACCAGACAATATCAACCACCCTTTTCCTCTTATCTGTCTGCTTTCCTACTCCTTGCAGCCATGGCACCCACTCTAGCCACGGCATTTGCCCGCCGCTGGTGGATGGCGGTAACGGCCATCATTGAAAATCTGCTCTTCTCCGCCGTTCTGCTGGGCTGGGGTTCCTTACTCATCATGCTGAAGTCTGAAGGCTTCTATTCATACCTCTGCACAGATCCAGGAAACAGTTCGACGGCAAACTTCTCCTTACCAGCTGTGCCTTCATCACTGTCGAATGATGCAGAATATGAATATGACGAGTTCCAGCCTGCCCAGCATGATGGAGGGGTGGAGGTGGTCCCTCTGAAACATCCGGAGGAACACCTGAGGATGAACGGCTGGCTCATCTGTAAAGAACAGGATGAGATGCTGAATCTGGCATTTACCGTGGGCTCCTTCCTCCTCAGCGCCATCACACTCCCTCTCGGAATTGTCATGGACAAATACGGTCCACGCAAACTCCGCCTGCTTGGAAGTGCCTGCTTTGCCCTCTCGTGCCTTATGATCGCTTATGGAGCCAGCAACCCAAATGAACTATCCGTTCTGATCTTCATCGCTTTGACCTTTAATGGCTTTGGGGGAATGTGTATGACCTTCACTTCACTTACGCTGCCCAACATGTTTGGTGACCTGCGTGCCACCTTCATCGCACTCATGATCGGCTCGTATGCTTCCTCGGCTGTAACCTTTCCTGGGGTCAAGGTGATCTATGACATTGGTGTGACCTTCATCACGATTCTGGTGGTCTGGGCAGGCTGTGCAGGCCTCGTCTTCATCAACTGCTTCTTTAACTGGCCCCTGGAGCCATTCCCTGGACCCGAGGACATGGACTACACTGTCAAGATCAAGTTCAGTTGGCTGGGATTTGACCATAAGATTACAGGAAAGCAGTTTTATAATCAAGTGACGACAGTGGGCAAGCGTCTTAGCGTGGATAACAGTCAGAAACAGAAACTTGCCAAGGAGGGTCAGAAACTTTGTCTGTCCACCATGGACCTGGAACTGCATTGTGAGCCCAAGGAGGAAACCCAGTCATTCATGAAAAGTATTTTTAGCCCTCTATTCATGTTGAGTCTGGTGACCATGTGTGTAACTCAGCTGCGTCTCATCTTCTACATGGGAGCCATGAACAACATCTTGGAGGCCCTCAGCGGAGGAGATCTCAACACAGTAAGCCTCTACACCTCCATTTTTGGCGTGATGCAACTCTTGTGCTTGATGACGACGCCGGTCATCGGTCAGATCATGGACTGGAAGCTGAAAGAATGTGATGATGGAGAAACCGATGAAAAAGAACCCAACAAGGATGAACCCCAGCCCAAACGCAGAGACAGACAGATTCAGAAAGTCACCAATGCCACACGTGCCTTCATCTTCACCAACATCCTCCTCGTCGGCTTTGGCATCACCTGCCTAATTCCTAATCTCCCGCTTCAGATGCTCTCATTTGTCCTTCACACCATCGTCAGAGGCTTCATCCACTCCGCCATCGGAGGACTTTACGCAGCTGTGTACCCATCATCACAGTTTGGCAGTCTGACTGGTATGCAGTCATTGGTTAGCGCTCTGTTCGCTCTGCTGCAGCAGCCTTTGTTCATGGCCATGATGGGACCACTGAAGGGAGACCCACTCTGGGTGAATGTTGGTCTGCTGGTTCTCAGTATGCTGGGCTTCTTGTTACCACTCTACCTGCTGTACTTCAGGAGAACTCTGCACAAAAAGAGGAAGGAGAAAGAAAATGATGCTAAAATCTATTTGAAAATCAACGGCAGTGATGTACCAGAGGCATTTGTGTAAAAAAAAGAAAGAAAAAGAAGCAGATAAAGGGAAAAACAAAGGCATGAGAATATCATCACAGCTACACAAAAACACATACACTCAATGATGATTAAA

Function

symbol description
slc43a2b Predicted to enable L-amino acid transmembrane transporter activity and neutral amino acid transmembrane transporter activity. Predicted to be involved in neutral amino acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; myotome; retinal inner nuclear layer; and yolk syncytial layer. Orthologous to human SLC43A2 (solute carrier family 43 member 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08229 SLC43A2; MFS transporter, LAT3 family, solute carrier family 43, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_11110559_11121354.mRNA True 2689 mRNA 0.45 13 11110463 11122171

Neighbor

gene id symbol gene type direction distance location
CI01000304_11083948_11091592 PITPNAB, PITPNA coding downstream 18871 11083838 ~ 11091592 (-)
CI01000304_11065581_11077156 NA coding downstream 33307 11065239 ~ 11077156 (-)
CI01000304_10812673_10812980 NA coding downstream 295225 10812533 ~ 10815238 (-)
CI01000304_10350748_10388571 CADM2A coding downstream 721861 10349869 ~ 10388602 (-)
CI01000304_10284509_10291314 NLE1, NLE1.S coding downstream 819149 10284509 ~ 10291314 (-)
CI01000304_11124801_11135838 NA coding upstream 1986 11124157 ~ 11137342 (-)
CI01000304_11272501_11275583 STOM, STOML3B, STOML3 coding upstream 150053 11272224 ~ 11275583 (-)
CI01000304_11282245_11288087 PROSER1 coding upstream 159970 11282141 ~ 11288087 (-)
CI01000304_11304660_11306789 NA coding upstream 182389 11304560 ~ 11306871 (-)
CI01000304_11330383_11335607 SMPD1 coding upstream 207471 11329642 ~ 11336120 (-)
G425104 NA non-coding downstream 108869 10934381 ~ 11001594 (-)
G424932 NA non-coding downstream 210562 10899107 ~ 10899901 (-)
G424907 NA non-coding downstream 260980 10849201 ~ 10849483 (-)
G424818 NA non-coding downstream 287814 10769715 ~ 10822649 (-)
G425126 NA non-coding upstream 15206 11137377 ~ 11137710 (-)
G425167 NA non-coding upstream 17743 11139914 ~ 11140117 (-)
G425168 NA non-coding upstream 19516 11141687 ~ 11141959 (-)
G425188 NA non-coding upstream 83451 11205622 ~ 11257296 (-)
G425190 NA non-coding upstream 83745 11205916 ~ 11251704 (-)
G424808 NA other downstream 567798 10444355 ~ 10542665 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other downstream 917568 10190574 ~ 10192357 (-)
CI01000304_10160458_10161768 VAMP2 other downstream 946133 10160458 ~ 10163762 (-)
CI01000304_09737662_09738777 NA other downstream 1370992 9736746 ~ 9738777 (-)
CI01000304_09566730_09575706 NA other downstream 1541429 9566730 ~ 9575706 (-)
CI01000304_11338304_11348212 ILK other upstream 224849 11338019 ~ 11348212 (-)
G425580 NA other upstream 746506 11868677 ~ 11872906 (-)
G426106 NA other upstream 1214530 12336701 ~ 12340228 (-)
CI01000304_12559311_12559998 NA other upstream 1436683 12558854 ~ 12560135 (-)
G426147 NA other upstream 1573827 12719497 ~ 12805926 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location