CI01000304_11272501_11275583 (STOM, STOML3B, STOML3)


Basic Information

Item Value
gene id CI01000304_11272501_11275583
gene name STOM, STOML3B, STOML3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11272224 ~ 11275583 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_11272501_11275583.mRNA
GTGAAAATAATGGGGGTTTGGGTTGCTGTGGGTGGATCCTTGTGATTATCTCTGCATTTTTCAGCATCTTAATATTTCCAATCAGCATTTTCATAAGCATTAAGATTGTGAAAGAGTATGAGCGTGCTGTCATATTTAGACTGGGGAGAATAACAGCTCGAAAAGCCAAAGGACCAGGAATCTTCTTCATCCTCCCCTGCACGGACTCTTTTGTCAAAGTGGATCTGAGAACCATCTCATTTGACATCCCTCCCCAGGAGATCTTGACCAAAGACTCGGTGACAGTTTCTGTGGATGGTGTTGTGTACTTCCGTGTAAGTGACCCTGTTGCCTCAGTGGCAAACGTGACCAATGCGGATTACTCCACCCGCCTACTGGCCCAGACCACATTGAGGAATGTCTTGGGGACCAAGAACCTGGCTGAGGTCCTTTCTGACCGAGAAGGCATCTCCCACAGTATGCAGATGTCTCTAGATGAGGCCACAGATTCGTGGGGTATCAAGGTGGAGCGAGTGGAGATTAAAGATGTTAAACTACCACAGCAGCTGCAGAGAGCTATGGCAGCCGAGGCCGAGGCTGCCCGTGAGGCCAGAGCAAAAGTCATTGCAGCAGAGGGAGAGATGAATGCATCCAGGGCTCTGAAGGAGGCGTCTCTGGTGATCGCAGAGTCTCCATCCGCCCTTCAGCTCAGATACCTCCAAACTCTCAACACCATTGCAGCTGAGAAGAACTCCACCATCATCTTCCCTCTGCCCATGGACGTCATGAGTCACTTCATGAAGAAATGATCGCTGAATATTCACAAAGTTTATATTACACAAAGTGTTTACTAATCATTCATTTAGTAATTTTTACATGATTTTCTTATGTGCCATGTTTAACATATTTAAGTTTTTTACATGTTGTGGGGATGATATCATATATCTTTACCTGGAAAATAGTGATGCAACAAATGACTTTATTTCAAAAATACAATATCATATTTCAGAAAATATATCAATGTGTTATGCAACTTTCAAATGCCAATTTTATATTCTTATACAAGTATGCATGAAATTAAATAAA

Function

symbol description
stom Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be active in plasma membrane. Orthologous to human STOM (stomatin).
stoml3b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in intestinal bulb. Orthologous to human STOML3 (stomatin like 3).
stoml3 Predicted to act upstream of or within signal transduction. Predicted to be located in cilium and membrane raft. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

NR:

description
Stom protein

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG:

id description
K17286 STOM; erythrocyte band 7 integral membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_11272501_11275583.mRNA True 1065 mRNA 0.43 6 11272224 11275583

Neighbor

gene id symbol gene type direction distance location
CI01000304_11124801_11135838 NA coding downstream 134882 11124157 ~ 11137342 (-)
CI01000304_11110559_11121354 SLC43A2B coding downstream 150053 11110463 ~ 11122171 (-)
CI01000304_11083948_11091592 PITPNAB, PITPNA coding downstream 180632 11083838 ~ 11091592 (-)
CI01000304_11065581_11077156 NA coding downstream 195068 11065239 ~ 11077156 (-)
CI01000304_10812673_10812980 NA coding downstream 456986 10812533 ~ 10815238 (-)
CI01000304_11282245_11288087 PROSER1 coding upstream 6558 11282141 ~ 11288087 (-)
CI01000304_11304660_11306789 NA coding upstream 28977 11304560 ~ 11306871 (-)
CI01000304_11330383_11335607 SMPD1 coding upstream 54059 11329642 ~ 11336120 (-)
CI01000304_11338304_11348212 ILK coding upstream 62436 11338019 ~ 11348212 (-)
CI01000304_11359135_11362408 NA coding upstream 83334 11358917 ~ 11362408 (-)
G425230 NA non-coding downstream 1736 11269185 ~ 11270488 (-)
G425229 NA non-coding downstream 3775 11268197 ~ 11268449 (-)
G425228 NA non-coding downstream 5127 11266326 ~ 11267097 (-)
G425188 NA non-coding downstream 14928 11205622 ~ 11257296 (-)
G425190 NA non-coding downstream 20520 11205916 ~ 11251704 (-)
G425204 NA non-coding upstream 5393 11280976 ~ 11281204 (-)
G425269 NA non-coding upstream 154034 11429617 ~ 11430150 (-)
G425479 NA non-coding upstream 172044 11447627 ~ 11447954 (-)
G425517 NA non-coding upstream 303648 11579231 ~ 11579432 (-)
G425533 NA non-coding upstream 323306 11598889 ~ 11599266 (-)
G424808 NA other downstream 729559 10444355 ~ 10542665 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other downstream 1079329 10190574 ~ 10192357 (-)
CI01000304_10160458_10161768 VAMP2 other downstream 1107894 10160458 ~ 10163762 (-)
CI01000304_09737662_09738777 NA other downstream 1532753 9736746 ~ 9738777 (-)
CI01000304_09566730_09575706 NA other downstream 1703190 9566730 ~ 9575706 (-)
G425580 NA other upstream 593094 11868677 ~ 11872906 (-)
G426106 NA other upstream 1061118 12336701 ~ 12340228 (-)
CI01000304_12559311_12559998 NA other upstream 1283271 12558854 ~ 12560135 (-)
G426147 NA other upstream 1420415 12719497 ~ 12805926 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location