RNA id: CI01000304_11110559_11121354.mRNA


Basic Information

Item Value
RNA id CI01000304_11110559_11121354.mRNA
length 2689
RNA type mRNA
GC content 0.45
exon number 13
gene id CI01000304_11110559_11121354
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11110463 ~ 11122171 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTAAGTGCCGGTAACTGCAGGAAGAAGAGAGAGGGGGAAGAGAGAGAGCAAAGGCATCAAGGGGGAGATCACTCTGCGCTAAAAGGGTACAGAACTTGTTTGCCTTTCTCTCAAAGGTATGTCTTCTATATTTTATTTTATTAATACATTTTTTACTTATACTATTTTCTTTTGAACAAATGCAGCACATTATATGACCAGTAGGATTGTTAATTTCTAAAAGACAAAGAGGATTATTCTTTCACACACAAAGTCAGTTATTTTTCTGAGTTGCATTAGTGATGAACTTTTAATAATCCATGTGTTTGAAATACAAGTCACACTGAGATATAAATGTTACATCAGGAATTATGTGATGTTATAATGTCAGAATTCAATTTACTTTTATCTTTTTGATATTTTGAATCTAAACAATGTATAGTTATGTGAATTATGTAGTTTTGGGACCCCTCCCTGTCACTCTTCTTGCACTGTAATGCAAAAGAGCCAATTGAGTTTGAAAGAACTGGTTTTGAAAGTGATACGCATAACAAAGAAGATGTGAGTCTTTGAAGTGGCTTCAGTGGATCATTTGCACATTTTAATAAAAGTTCAAAAAGAAAAGAATAAAGAAGTGCCTGATCAACAATTTAGGAATTTCTTTATTTGAGCTCTAGTAATCCAGACTTATCATCACATGTAAACCTGGCCATTCCATTAAAATGACTCTAACACACTTCTCTCTCTTTTCATCCACAGATTGTAAGGTCTAATCCCACCAGACAATATCAACCACCCTTTTCCTCTTATCTGTCTGCTTTCCTACTCCTTGCAGCCATGGCACCCACTCTAGCCACGGCATTTGCCCGCCGCTGGTGGATGGCGGTAACGGCCATCATTGAAAATCTGCTCTTCTCCGCCGTTCTGCTGGGCTGGGGTTCCTTACTCATCATGCTGAAGTCTGAAGGCTTCTATTCATACCTCTGCACAGATCCAGGAAACAGTTCGACGGCAAACTTCTCCTTACCAGCTGTGCCTTCATCACTGTCGAATGATGCAGAATATGAATATGACGAGTTCCAGCCTGCCCAGCATGATGGAGGGGTGGAGGTGGTCCCTCTGAAACATCCGGAGGAACACCTGAGGATGAACGGCTGGCTCATCTGTAAAGAACAGGATGAGATGCTGAATCTGGCATTTACCGTGGGCTCCTTCCTCCTCAGCGCCATCACACTCCCTCTCGGAATTGTCATGGACAAATACGGTCCACGCAAACTCCGCCTGCTTGGAAGTGCCTGCTTTGCCCTCTCGTGCCTTATGATCGCTTATGGAGCCAGCAACCCAAATGAACTATCCGTTCTGATCTTCATCGCTTTGACCTTTAATGGCTTTGGGGGAATGTGTATGACCTTCACTTCACTTACGCTGCCCAACATGTTTGGTGACCTGCGTGCCACCTTCATCGCACTCATGATCGGCTCGTATGCTTCCTCGGCTGTAACCTTTCCTGGGGTCAAGGTGATCTATGACATTGGTGTGACCTTCATCACGATTCTGGTGGTCTGGGCAGGCTGTGCAGGCCTCGTCTTCATCAACTGCTTCTTTAACTGGCCCCTGGAGCCATTCCCTGGACCCGAGGACATGGACTACACTGTCAAGATCAAGTTCAGTTGGCTGGGATTTGACCATAAGATTACAGGAAAGCAGTTTTATAATCAAGTGACGACAGTGGGCAAGCGTCTTAGCGTGGATAACAGTCAGAAACAGAAACTTGCCAAGGAGGGTCAGAAACTTTGTCTGTCCACCATGGACCTGGAACTGCATTGTGAGCCCAAGGAGGAAACCCAGTCATTCATGAAAAGTATTTTTAGCCCTCTATTCATGTTGAGTCTGGTGACCATGTGTGTAACTCAGCTGCGTCTCATCTTCTACATGGGAGCCATGAACAACATCTTGGAGGCCCTCAGCGGAGGAGATCTCAACACAGTAAGCCTCTACACCTCCATTTTTGGCGTGATGCAACTCTTGTGCTTGATGACGACGCCGGTCATCGGTCAGATCATGGACTGGAAGCTGAAAGAATGTGATGATGGAGAAACCGATGAAAAAGAACCCAACAAGGATGAACCCCAGCCCAAACGCAGAGACAGACAGATTCAGAAAGTCACCAATGCCACACGTGCCTTCATCTTCACCAACATCCTCCTCGTCGGCTTTGGCATCACCTGCCTAATTCCTAATCTCCCGCTTCAGATGCTCTCATTTGTCCTTCACACCATCGTCAGAGGCTTCATCCACTCCGCCATCGGAGGACTTTACGCAGCTGTGTACCCATCATCACAGTTTGGCAGTCTGACTGGTATGCAGTCATTGGTTAGCGCTCTGTTCGCTCTGCTGCAGCAGCCTTTGTTCATGGCCATGATGGGACCACTGAAGGGAGACCCACTCTGGGTGAATGTTGGTCTGCTGGTTCTCAGTATGCTGGGCTTCTTGTTACCACTCTACCTGCTGTACTTCAGGAGAACTCTGCACAAAAAGAGGAAGGAGAAAGAAAATGATGCTAAAATCTATTTGAAAATCAACGGCAGTGATGTACCAGAGGCATTTGTGTAAAAAAAAGAAAGAAAAAGAAGCAGATAAAGGGAAAAACAAAGGCATGAGAATATCATCACAGCTACACAAAAACACATACACTCAATGATGATTAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08229 SLC43A2; MFS transporter, LAT3 family, solute carrier family 43, member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488143 lncRNA downstream 108869 10934381 ~ 11001594 (-) True G425104
TU487939 lncRNA downstream 210562 10899107 ~ 10899901 (-) True G424932
TU487914 lncRNA downstream 260980 10849201 ~ 10849483 (-) True G424907
TU487820 lncRNA downstream 287814 10769715 ~ 10822649 (-) True G424818
TU488168 lncRNA upstream 15206 11137377 ~ 11137710 (-) True G425126
TU488209 lncRNA upstream 17743 11139914 ~ 11140117 (-) True G425167
TU488210 lncRNA upstream 19516 11141687 ~ 11141959 (-) True G425168
TU488232 lncRNA upstream 83451 11205622 ~ 11257296 (-) True G425188
TU488235 lncRNA upstream 83745 11205916 ~ 11251704 (-) True G425190
CI01000304_11083948_11091592.mRNA mRNA downstream 18871 11083838 ~ 11091592 (-) True CI01000304_11083948_11091592
CI01000304_11065581_11077156.mRNA mRNA downstream 33307 11065239 ~ 11077156 (-) True CI01000304_11065581_11077156
CI01000304_10812673_10812980.mRNA mRNA downstream 295225 10812533 ~ 10815238 (-) False CI01000304_10812673_10812980
CI01000304_10350748_10388571.mRNA mRNA downstream 721861 10349869 ~ 10388602 (-) True CI01000304_10350748_10388571
CI01000304_10284509_10291314.mRNA mRNA downstream 819149 10284509 ~ 10291314 (-) True CI01000304_10284509_10291314
CI01000304_11124801_11135838.mRNA mRNA upstream 1986 11124157 ~ 11137342 (-) True CI01000304_11124801_11135838
CI01000304_11272501_11275583.mRNA mRNA upstream 150053 11272224 ~ 11275583 (-) True CI01000304_11272501_11275583
CI01000304_11282245_11288087.mRNA mRNA upstream 159970 11282141 ~ 11288087 (-) True CI01000304_11282245_11288087
CI01000304_11304660_11306789.mRNA mRNA upstream 182389 11304560 ~ 11306871 (-) True CI01000304_11304660_11306789
CI01000304_11330383_11335607.mRNA mRNA upstream 207471 11329642 ~ 11336120 (-) True CI01000304_11330383_11335607
TU487810 other downstream 567798 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 917568 10192696 ~ 10192895 (-) True G424459
TU487428 other downstream 946133 10153446 ~ 10164330 (-) False G424458
TU487429 other downstream 946133 10153859 ~ 10164330 (-) True G424458
TU487077 other downstream 1370992 9739353 ~ 9739471 (-) True G424168
TU488239 other upstream 224849 11354883 ~ 11357146 (-) False G425194
TU488240 other upstream 224849 11354883 ~ 11357146 (-) True G425194
TU488688 other upstream 746506 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 1214530 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 1436683 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005128 False 2029 mRNA 0.50 14 NC_007121.7 24374504 ~ 24391716 (-)