RNA id: CI01000304_11083948_11091592.mRNA


Basic Information

Item Value
RNA id CI01000304_11083948_11091592.mRNA
length 836
RNA type mRNA
GC content 0.46
exon number 8
gene id CI01000304_11083948_11091592
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11083838 ~ 11091592 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATCAGGTCGGGCAGCTGTACTCCGTAGCGGAGGCCAGTAAGAATGAGACGGGTGGAGGAGAGGGCGTGGAGGTGTTGAAGAACGAACCCTATGAGAAAGATGGAGAGAAGGGGCAGTACACACACAAAATCTACCACCTGCAGAGAAAAACATATGTTCCAGCCATCTGTCCATGTCAAGGTGTCTACAGATACAGTAACACTGTAAATGAGTATATGAAAGAAAACTTCCTCATCAAGATCGAGACGTGGCACAAACCTGACATGGGACAGCAGGATAATGTTCACGGTTTAGACCCAGACACCTGGAAGAAGGTGGATGTGGTGTACATAGACATCGCAGACCGGAGTCAGGTGGAGCCAAAGGACTATAAACCAGAGGAAGACCCCACTAAGTTTAAGTCTGTAAAAACAGGAAGAGGGCCGCTCGGTCCGGATTGGAAGAAAGAACTACCTAAAAAGACAGACTGCCCACACATGTGTGCCTACAAACTGGTTACTGTCAAGTTCAAGTGGTGGGGCCTGCAAAACAAAGTGGAAAACTTCATTCAAAAGCAAGAGAAGCGTTTGTTCACTAATTTCCACCGGCAGCTGTTCTGTTGGATTGATAAATGGATCGAGCTGAACATGGATGACATCCGCAGAATGGAGGAAGAGACCAGGAGGGAACTGGATGAGATGAGAGTGAAGGATCCAGTGAAAGGCATGGTGGCTCTTGAAGACTGAGGCTGCTCTGTGTTTCTGGATGCTGCTGTTCATAAAGGTAATTCACGATCTTTAGCGCCCCCTAATGTCATTTATCTAACACAGCAATTGAGAACTAAAAAATAATTAAA

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488143 lncRNA downstream 82244 10934381 ~ 11001594 (-) True G425104
TU487939 lncRNA downstream 183937 10899107 ~ 10899901 (-) True G424932
TU487914 lncRNA downstream 234355 10849201 ~ 10849483 (-) True G424907
TU487820 lncRNA downstream 261189 10769715 ~ 10822649 (-) True G424818
TU488168 lncRNA upstream 45785 11137377 ~ 11137710 (-) True G425126
TU488209 lncRNA upstream 48322 11139914 ~ 11140117 (-) True G425167
TU488210 lncRNA upstream 50095 11141687 ~ 11141959 (-) True G425168
TU488232 lncRNA upstream 114030 11205622 ~ 11257296 (-) True G425188
TU488235 lncRNA upstream 114324 11205916 ~ 11251704 (-) True G425190
CI01000304_11065581_11077156.mRNA mRNA downstream 6682 11065239 ~ 11077156 (-) True CI01000304_11065581_11077156
CI01000304_10812673_10812980.mRNA mRNA downstream 268600 10812533 ~ 10815238 (-) False CI01000304_10812673_10812980
CI01000304_10350748_10388571.mRNA mRNA downstream 695236 10349869 ~ 10388602 (-) True CI01000304_10350748_10388571
CI01000304_10284509_10291314.mRNA mRNA downstream 792524 10284509 ~ 10291314 (-) True CI01000304_10284509_10291314
CI01000304_10220812_10226103.mRNA mRNA downstream 857735 10219589 ~ 10226103 (-) True CI01000304_10220812_10226103
CI01000304_11110559_11121354.mRNA mRNA upstream 18871 11110463 ~ 11122171 (-) True CI01000304_11110559_11121354
CI01000304_11124801_11135838.mRNA mRNA upstream 32565 11124157 ~ 11137342 (-) True CI01000304_11124801_11135838
CI01000304_11272501_11275583.mRNA mRNA upstream 180632 11272224 ~ 11275583 (-) True CI01000304_11272501_11275583
CI01000304_11282245_11288087.mRNA mRNA upstream 190549 11282141 ~ 11288087 (-) True CI01000304_11282245_11288087
CI01000304_11304660_11306789.mRNA mRNA upstream 212968 11304560 ~ 11306871 (-) True CI01000304_11304660_11306789
TU487810 other downstream 541173 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 890943 10192696 ~ 10192895 (-) True G424459
TU487428 other downstream 919508 10153446 ~ 10164330 (-) False G424458
TU487429 other downstream 919508 10153859 ~ 10164330 (-) True G424458
TU487077 other downstream 1344367 9739353 ~ 9739471 (-) True G424168
TU488239 other upstream 255428 11354883 ~ 11357146 (-) False G425194
TU488240 other upstream 255428 11354883 ~ 11357146 (-) True G425194
TU488688 other upstream 777085 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 1245109 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 1467262 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005122 False 1304 mRNA 0.45 12 NC_007121.7 24323751 ~ 24371312 (-)
bowfin (Amia calva) AMCG00005527 True 3897 mRNA 0.42 9 CM030142.1 2157962 ~ 2170629 (+)