RNA id: CI01000304_09949821_09951564.mRNA


Basic Information

Item Value
RNA id CI01000304_09949821_09951564.mRNA
length 3264
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000304_09949821_09951564
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9949165 ~ 9953257 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTGGTTCATTGAAGTAATTTAAACCATTAGAAGACCCAGTTGTATAATTTTTTCCCCCTATATTTTTGTTTCCTTTCTATAAAGTTGCGCTCGGTTATTTAGTGAGTTTATGTGATTTTTGTTTATATTATAAAAATAAAAACCACAAGACATAATAATAACTTGAATGAACTTACACAAAAGATCCCGTTCAAAGTTTACATATGCTTGATTATTAATTCTTAATAGTGTGTGTTGTCACCTGGATGAGCAACAGCTGCAAACATTCACTGATGCCTAAGGCAACACACAACACATTAAGAGAGCCAGTGGCTGTAAATCTTTGAACAGGATGATTGGAAATTGTTATTATTTTATTTAAAGATGTATATATATTTTTAGTACTGCCCTACAAAAGCTACATAAAATACTTTCCAGAAGACAAAATAAATGATGGATGATGGAGGGGCACAAGAAGAATCTTATATAGAATCTTATTATAATATTCAAATTATTAATGGATTATATTTAGCCAAGAAAGCATGCAAAGAGCTCTCCCCTTATAATCACTAAAAACTCAGTTCAGTTCATCGCAATCTCACAAAGTTACATTATAATCAGTTACACTCTCTACATTGCACAGTGAATCTCTTATTTACATTGTGTCTACGCTTTGTTTATTATAATGAGAGGGTTCACGAGCATGCAGAACTGAAAAAAAAAAAAAAACTGTGAGCAGCGAGTGGATTCTGACTAAATTAAACACCTCTGATTGGCCATTGCGTTCAAGAAATCAACAGACATGTCTGTGATTGGCTACATCTCTCAGCGCTGCAAAAACATGCTGAAATAGAAACTTTGACGCTCTTCAGAGTGCAAATACGCACTGGAGCGTTCGCCAAATATGTTTCTGCAAAATCAGATGGGGCCCCATGATTGCTTACCTCGTTTATTGGTTAAGTCCGCCTATGTGGAAGAGTGGGGGAACATCTCACAGCAAGAACTGCCAAATCTGGCTCAGTTCATGAGGATGAGATGAACTGCTAGTACTTAAAGGGGTGGTCACTTTTTCAACTTTAGTTAGTGTGTAATGTTGCTGTTAGAGCATAAGCAACATCTGCAAAGTTATGACACTCAAAGTTCAATGCAAAGGGAGATATTTTCTTTTAAAAGGATTCGCTGTTTAAGGACTACAACAAAGGGGCATTTTAGGTCCCCTTTAAAGCAGCTGGTGCCACACCAGATACTGACTGCTGCTTACTGACAGCTACTTTTGATTTTTTTGTTTAGGGACTCATTATTCTATTTCTGTTTGTCAAATGTCTGTGAAATTTGTATAGTTTATGTCTCAGTTGTGAAATCTTTTTGTGTTCATACAAATATTTACACGTTAAGACACTTGCTGGGGAAAAAACAGTTGAAAGTGAGAGGATGTTTATATTATTTTATTGAGTTTTTATTATTTTCCTTGAGCTGAAAAAAAAAAAAGCAACATGAAACTGGGTCAAAATGTTACAATGTTGTATACTAGATCCTGTACAACTTCACCTGGAAGACAGGCGTGAAGCTTCTCTCTTAGGCAAAGTCTCACCAGTTCTGTTTTGCTTATCTAATCAAAGATATTCAAAGGAACCAGCTTCAATTTCCTCTCACTTGCTCATTCTATCAAAGAAACACTCAAGTAAGACAGTCGAGAAGTTCCTTTGACTAAAATGCATCCCTCTGTCATCTTTCTGGGCCTTGCCATTACAATGTTGCTCTCCGAACACTGGGGAACTGCAACTGTGGTTGAAGACTTCAACCATGTTGAGAGATGCAAGGACTCACTGTATATGGGCACCCCTCCACGCGGCTTCAAAAGTGACAAGCTCAAGAAGATCTGCCAGCGCTACGCTGACAAACCCAGATACGTGACTCTGTACGACTCCCAAAACCGCATCCCAGTTTACTCTGCATACACCTTCAAGAAAACAGAGGGCGATCGGCGTGTGGACTACCCCTGGATGTATGAACCTCAGCTTGCAGAGCTTGATGGGAATGGGAACATGTTGCCGTTCCCCACTGGATACTTACACATGAAGTTTGAGGACAGCCAGGCGGTTTTGGATGACTACTCCGACGTGGTTCTGTACGAGCGAGGCCATCTGAATCCAGACCAGCACCAGTCAGACCCCCAGGACCGAGCGGCTACCTACACGCTCACCAACGTCGTGCCAGAAATCCGCGAGTTCAACATCGGTCCATGGCGCCAACATGAAGAGCGCATCCGCGTGCGCCTCAACAACTTCTGCCGGGGCACAGCCTACATCGTAACTGGGGTTACCACTACCGGAAACATGATCCGACGCAACAACCAGGACCGCGTTGCCATTCCCGAAGATGTGTGGTCTGCCTACTGCTGCACCGAGTACGACCGGAACGCGCCACACAACGTGCGAATCCGTTTCCCTACCCAAGCGGCCCTCGCCAAGAACGCGAAGGAGGGGAACACAGTCCAAGAGCTCTCAGTGCTGGATCTGGAGAGCTACCTGACAAATAGAATGGCCGTAGACAAGAACTTCCAGCTGTTCTATGATAACTGCGTCTCACCTTCACCTCTTCCTCCCTACCTTCATCATGCCAAATGATCCGACCTGCCTTCTGCTTATAGCTGTTTCTTTTTTCTTGCTTTCTACTTTCCTGTAGCTTCTCTGTGTATTTCTTTATAGAAAATGATTTGAAATAGCAACTAAATGTAACAATCTGCAGAATGTTTGGTTCGCATTATTATACACTACCGTTCAAAAGTAAGATTTTTTTTTTTTTTTTTTTTTAAGAAATTAATAAGGATGCGTTAAATTGGTCAAAAGTGTCAGTAAATACATTTGATTTATTTATGATATATATATATATATATATATATATATATACCAGGTCCTAACTTTTGAACGGTATAGTGTATAGGCCTATAAAATATTTTTAATCATATTTCTGAGAATACTTAAGGAAAATTAGTCATGTTATGGTGTGAAATGATTGTGTAACATTTGTTTTTTCCTGTCAGCTCTCTGCTTTAACTATTTTATTGCTTTTATCTTAACATTAATCATTCTATATGCACAGAGTAATTGTGACAAAGTACCTCAGTTTGCATATACATGCTACATAGTTCACTGACACCACCTGAAGTTCTAGTTTGTCTTTATGGGTGATTTAAGATAATGTGTGAAAACAAAAAAGCTGACATGTCACATTTTTCCAACCTTGTTGTTTCAATATATCATGACTGATACAAACCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487170 lncRNA downstream 108638 9840107 ~ 9840527 (-) True G424239
TU487148 lncRNA downstream 204547 9744205 ~ 9744618 (-) True G424218
TU487147 lncRNA downstream 205147 9743568 ~ 9744018 (-) True G424217
TU487064 lncRNA downstream 251842 9695733 ~ 9697323 (-) True G424159
TU487078 lncRNA downstream 253786 9694525 ~ 9695379 (-) True G424169
TU487386 lncRNA upstream 24002 9977259 ~ 9977486 (-) True G424418
TU487416 lncRNA upstream 80337 10033594 ~ 10036068 (-) True G424448
TU487459 lncRNA upstream 109008 10062265 ~ 10062752 (-) True G424482
TU487451 lncRNA upstream 129141 10082398 ~ 10090227 (-) True G424474
TU487473 lncRNA upstream 206391 10159648 ~ 10160361 (-) True G424496
CI01000304_09944778_09945833.mRNA mRNA downstream 3332 9944623 ~ 9945833 (-) True CI01000304_09944778_09945833
CI01000304_09765626_09814386.mRNA mRNA downstream 134779 9765626 ~ 9814386 (-) True CI01000304_09765626_09814386
CI01000304_09751291_09754997.mRNA mRNA downstream 193920 9750921 ~ 9755245 (-) True CI01000304_09751291_09754997
CI01000304_09737662_09738777.mRNA mRNA downstream 210388 9737226 ~ 9738777 (-) False CI01000304_09737662_09738777
CI01000304_09726631_09727403.mRNA mRNA downstream 218857 9725947 ~ 9730308 (-) True CI01000304_09726631_09727403
CI01000304_09955649_09957311.mRNA mRNA upstream 2297 9955554 ~ 9959307 (-) True CI01000304_09955649_09957311
CI01000304_10119297_10119833.mRNA mRNA upstream 165633 10118890 ~ 10119833 (-) True CI01000304_10119297_10119833
CI01000304_10123588_10128249.mRNA mRNA upstream 170150 10123407 ~ 10128249 (-) True CI01000304_10123588_10128249
CI01000304_10137324_10147067.mRNA mRNA upstream 183783 10137040 ~ 10149531 (-) True CI01000304_10137324_10147067
CI01000304_10160458_10161768.mRNA mRNA upstream 207201 10160458 ~ 10163762 (-) False CI01000304_10160458_10161768
TU487077 other downstream 209694 9739353 ~ 9739471 (-) True G424168
TU487066 other downstream 380131 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 1083869 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 2296462 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 3166119 6744679 ~ 6783046 (-) True G422378
TU487428 other upstream 200189 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 200602 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 237317 10192696 ~ 10192895 (-) True G424459
TU487810 other upstream 491098 10444355 ~ 10542665 (-) True G424808
TU488239 other upstream 1393763 11354883 ~ 11357146 (-) False G425194

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005095 True 1011 mRNA 0.51 2 NC_007121.7 22494826 ~ 22497980 (-)