CI01000304_08567281_08570808 (PBDC1)


Basic Information

Item Value
gene id CI01000304_08567281_08570808
gene name PBDC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8567194 ~ 8570808 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_08567281_08570808.mRNA
GCAATCCTTCTATGAATACGAATCAGAGCGTCTGGTATTAAACACTGTCGGGCTTTTTAATCCCAATCCGACGTTTTTCAAATACAACAGTTATTTGAAATTGTCCTCTAGAGATCGTGAGAATCTTGTGCGTGTAGAAGGACAAGTGTGTGATGATGCCTCTAGCACAACCTCTACTGATGCTTATAATCGACTACGGCAAAATAATAACAACTCATCCGGGTCAAAAGGCGTCAGCATGGACACGGGGGATGTTCTTGCATCTCTGGGGATAGAGGGAGCCACCGCGGCTGCGCATGCGCTCTCTCTTCCAGCAGAAGCGTATGGAAATGATGCTCAGTTGGAAGTAATGTGGGCTATGAAAGCCTACAATCACGCAGAAGTTTACTTTAATCTTATTTCCTCAGTTGATCCTAAATTTCTAAAACTAACAAAATCAGACGAGCAGATATACACTAAATTCCGGGAAGCATTTCCTGACCTCAGTATTCAAGTTTTGGACCCGGAGCTGCTGAAGTCAGCAGACGCCAAAGAGGTTTGTGACGTTACTCTTGCACGTGAGATGTTTAATTTTAGACATTACCCATGGAGAGTCGGTCAAGCTCTATTTCAATTTTGTTTCCAGAAATGGAGGCCCTTTTGTAACCAGTTTGAAGGTGTTGTAGAGGACTTCAACTATGGTACATTATTACGTCTAGACTGTCAGAAGGACTACACGGAGCAGAACACGATATTTGCTACCAGAATCCAGTTTTATGCCATTGAGATTGCCAGAAACAGAGAAGGCTACAATGACGTCGTCCACAAAGCCAATTCAAAAACCAAACAACTTAAAAAAGATGAGAGTTAATCACAACAGTGTAAAATTTTAAGTGTCCTTCTTGGTGTAGTAGAGATCTTACACATGAAGCTCAAAAGTGGAGAAATACGTAATAAA

Function

symbol description
pbdc1 Is expressed in several structures, including immature eye; mesoderm; midbrain; musculature system; and sensory system. Orthologous to human PBDC1 (polysaccharide biosynthesis domain containing 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_08567281_08570808.mRNA True 937 mRNA 0.42 7 8567194 8570808

Neighbor

gene id symbol gene type direction distance location
CI01000304_08510508_08532975 NA coding downstream 34168 8510470 ~ 8533026 (-)
CI01000304_08329095_08386362 GFRA2B, GFRA2 coding downstream 180832 8329095 ~ 8386362 (-)
CI01000304_08218405_08218927 NA coding downstream 348267 8217634 ~ 8218927 (-)
CI01000304_08165245_08217042 NA coding downstream 350152 8165197 ~ 8217042 (-)
CI01000304_07961608_07968820 NA coding downstream 598245 7961565 ~ 7968949 (-)
CI01000304_08605819_08615439 HTR7B coding upstream 34067 8604875 ~ 8617967 (-)
CI01000304_08680653_08681838 NA coding upstream 109323 8680131 ~ 8682389 (-)
CI01000304_08692093_08712203 NA coding upstream 121151 8691959 ~ 8712203 (-)
CI01000304_08727439_08731885 NA coding upstream 156508 8727316 ~ 8732117 (-)
CI01000304_08754563_08783858 LOXL2A, LOXL2 coding upstream 183185 8753993 ~ 8783858 (-)
G423557 NA non-coding downstream 24508 8542460 ~ 8542686 (-)
G423551 NA non-coding downstream 52953 8513906 ~ 8514241 (-)
G423529 NA non-coding downstream 88530 8478182 ~ 8478664 (-)
G423524 NA non-coding downstream 93318 8473674 ~ 8473876 (-)
G423521 NA non-coding downstream 99922 8467040 ~ 8467272 (-)
G423588 NA non-coding upstream 100990 8671798 ~ 8672580 (-)
G423589 NA non-coding upstream 101868 8672676 ~ 8673012 (-)
G423615 NA non-coding upstream 378236 8949044 ~ 8949311 (-)
G423960 NA non-coding upstream 436800 9007608 ~ 9008693 (-)
G423972 NA non-coding upstream 466805 9037613 ~ 9098217 (-)
G422810 NA other downstream 914491 7630159 ~ 7652703 (-)
G422378 NA other downstream 1784148 6744679 ~ 6783046 (-)
G422354 NA other downstream 1935695 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 2083699 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 3894247 4661766 ~ 4672947 (-)
G423386 NA other upstream 291415 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 997548 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 1165938 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 1582638 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 1619766 10190574 ~ 10192357 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location