CI01000304_08329095_08386362 (GFRA2B, GFRA2)


Basic Information

Item Value
gene id CI01000304_08329095_08386362
gene name GFRA2B, GFRA2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8329095 ~ 8386362 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_08329095_08386362.mRNA
ATGGGATCTATCATGATTTTACTGAATATTCTGAGCGTCCTGTTTCTATTGGATGAGGTGGCACTTTCCATGGCCAGCCATTCTGCCTTGTCAGGGCTGGGAACTCATGGCTGGAGAGCCCCCATGGACTGCCTGAGGGCCAGTGAGGTGTGCAACCAAAACTCACAGTGCAGCTCACGCTTTCGCATCATGCGCCAGTGCCTGGTAGGTCGTGACAGGACTACCATGCTGGCCAACAGGGAGTGTCAGGCTGCCCTTGAGGTGCTGCAGGACAGCCCCCTGTATGACTGCCGCTGCAAGAGGGGCATGAAGAGGGAGCTACAATGTCTGCAGAGCTACTGGAGTATTCATATGGGAGAAGAACTCTATGAGACCTCCCCATATGAACCAATGCATCTTTCTGATGAGTTTCGACTTGCCTCCATTATTTCTGCCATGGACTCCGCTTCTGCAAAAGGGAATCTGTGTTCTGACACGGGCAAGCCCTGCAACCCATGTCTGGATGCCACGAAGGCCTGCAACCTCAATGACACCTGCAAGAAACAGCGCACTGCCCTCATGGCAACCTGCAACCCAGCAACTCCCATTCAGCAAGCTCACGAACCCTGCAACCGAAAACGCTGCCACAGAGGTCTGCGGCAGTTCTTCGACCGCGTACAAACGGAATTCAGCTACCCACTACTCTTCTGCTCCTGTCGGGATAAAGCGTGTGCCGAACGTCGCCGGCAAACCATCATGCCTGCTTGTTCATATGAAGAGAAGACAAAACCCAATTGCCTTGAGCTAAGGAGGACCTGTCGCTCAGATCCGCTCTGCAGATCCAGGCTGGCAGACTTCCACATGAATTGCCAGACGACACCGCATTCAATAACAAGCTGTCCTAATGATAACTACCACGGTTGTCTGGTGTCCTACGTTGGACTCATTGGATCAGATGTGACTCCAAACTATGTGGATGCCAGCCACACCAACATCACCATTTCCCCATGGTGTGGCTGTCGAGGCAGTGGAAATCACGAAGCTGAGTGTGAGACCTTCCTCCGAGACTTCAGAGAGAACACTTGCCTGAGGAATGCTATCCAGGCATTTGGTTATGGCACGGATGCGGGTCTAGTTCCCATCACAGAGTCTCATTCGGCAGTCCCATCAGTACGGACCAATCTGCAACCGGCTATCATCACCAAACATGTCATCAACTCAAATGATGTCAAGCAAATAGACAGTGCATGTGTTTTCTCCACGTGTGCTAACCTTCAGGACAGTGAGCAGAAATGTTCTTCTTCTAACAGTTTTGAATGTGCTGATGAGAATGTGTTAAACCCCAATATGGAGGGATCCATTGACTCGGTGGGCTCTCACCAGGCTGACAACAACAGAGCCAGACATTCATCGGTGACTTCAATCAGTGTTTCTGCCGCCACACTGACACTGGCCTTTGCACTGGTCAATCAGGTTCTG

Function

symbol description
gfra2b Predicted to enable signaling receptor activity. Predicted to be involved in nervous system development. Predicted to be located in plasma membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Orthologous to human GFRA2 (GDNF family receptor alpha 2).
gfra2 Predicted to enable glial cell-derived neurotrophic factor receptor activity. Predicted to be involved in nervous system development. Predicted to act upstream of or within positive regulation of peptidyl-serine phosphorylation of STAT protein and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be located in plasma membrane. Predicted to be extrinsic component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane.

GO:      GO:0004872

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_08329095_08386362.mRNA True 1458 mRNA 0.52 9 8329095 8386362

Neighbor

gene id symbol gene type direction distance location
CI01000304_08218405_08218927 NA coding downstream 110168 8217634 ~ 8218927 (-)
CI01000304_08165245_08217042 NA coding downstream 112053 8165197 ~ 8217042 (-)
CI01000304_07961608_07968820 NA coding downstream 360146 7961565 ~ 7968949 (-)
CI01000304_07612069_07709665 NA coding downstream 619430 7612069 ~ 7709665 (-)
CI01000304_07464639_07466430 NA coding downstream 862665 7464235 ~ 7466430 (-)
CI01000304_08510508_08532975 NA coding upstream 124108 8510470 ~ 8533026 (-)
CI01000304_08567281_08570808 PBDC1 coding upstream 180832 8567194 ~ 8570808 (-)
CI01000304_08605819_08615439 HTR7B coding upstream 218513 8604875 ~ 8617967 (-)
CI01000304_08680653_08681838 NA coding upstream 293769 8680131 ~ 8682389 (-)
CI01000304_08692093_08712203 NA coding upstream 305597 8691959 ~ 8712203 (-)
G423454 NA non-coding downstream 6299 8317901 ~ 8322796 (-)
G423448 NA non-coding downstream 24380 8304184 ~ 8304715 (-)
G423379 NA non-coding downstream 87016 8241860 ~ 8242079 (-)
G423375 NA non-coding downstream 91965 8236882 ~ 8237130 (-)
G423369 NA non-coding downstream 93804 8231994 ~ 8235291 (-)
G423472 NA non-coding upstream 3457 8389819 ~ 8390034 (-)
G423474 NA non-coding upstream 4174 8390536 ~ 8390762 (-)
G423496 NA non-coding upstream 40461 8426823 ~ 8427031 (-)
G423501 NA non-coding upstream 48904 8435266 ~ 8435602 (-)
G423516 NA non-coding upstream 70084 8456446 ~ 8456781 (-)
G422810 NA other downstream 676392 7630159 ~ 7652703 (-)
G422378 NA other downstream 1546049 6744679 ~ 6783046 (-)
G422354 NA other downstream 1697596 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 1845600 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 3656148 4661766 ~ 4672947 (-)
G423386 NA other upstream 475861 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 1181994 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 1350384 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 1767084 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 1804212 10190574 ~ 10192357 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location