CI01000304_08165245_08217042


Basic Information

Item Value
gene id CI01000304_08165245_08217042
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8165197 ~ 8217042 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_08165245_08217042.mRNA
CTCGCAGACCCACGTCATGGAGCTTATTCAAGAGCTTGGTGTGGAGGTCTTTCCACAATACACAGAGGGCAAGAAGGTGCATCACATGGGTGGTCCGCATTCTAAAATCAAAACGTATGCTTCTAGCATCCCATCATACTCCCCGCTGATCCTGCTGGACTTCACCCAGATTCTGTGGCGGATTGACCGTCTCACTAAGACCATATCAGTTGAAGACCCAATGAGTTCTCCTAATGCCGAGCTCTATGACAGCATGACGCTTTACTCCTTCATGGAAAAACACATCTGGTCCACACAGGTAAAAGAAGAGATATCCTTGTGTAGCCGTATCGTGTTCGGCCTGGAAGCCTCTCAGGTCTCCTTCCTCTACTTTCTTATGTACTCCGCTGCAGCAGGGGGCACCCTACGCCTCCTAGAGACCACACCTGGCTCGGGTCAGGAGTTAAGAGTCAAGGGAGGCACTCAGCAGCTGTCAGAGAAGCTGGTGGAGCAGATCGGAGCGGAGCGGGTTCGGTTGGGTGCCGCCGTAACGACCATATGTCAGGATTCTGAGAACATAAAAGTTACGACTTCTGCAGGCACAGTCACTTGTAAAGCCGTCATTGTTGCGTGTCCTTCTCACTTGGCAGCCAAGATCCACTTCGAGCCTGCTCTGCCAGCTGAGCGCCAGAGCCTCATCCAGTGCCTGCCCATGGGCCACATGACGAAATTTATCGTCACATACCCCACTGCGTTTTGGAAGGAAAAGGGTTTCTCTGGGGAAATCGTGGTTCGCCCCTCAGAGGACTGCCCTTTAAGCGTCACATTTGATGCCACCAGCCCCAAAGGCAATCCAGCGCTGGTGGGGTTCATCACTGGAGTACAGGCCCTTGACTGGAGCGACAGAAAGATGGAGGAGAGAAGAGATGCTGTCATCTCCAGCCTGGTGAAGTACCTCGGCCCGGAGGCGTCCACCTACATTCACTATAGGGAAAAAGAATGGGCAAAGGAGGAATATAGTGGAGGCTGTCCTGTGAATGTAATGACTCCTGGGATGCTAACGTATTACCACCCTAGTCTTCGAAAGCCCTTCGGCAGGATTCATTGGGCAGGCGCAGAGACGGCCACCCAATGGTGTGGATACATTAGTGGGGCAATTCAGTCCGGTCAGCGGGCAGCTATGGAGGTCCTAGCTCAGATGTGTCCTTCTTCTCTGTCCCGGGAGGAACTGGACGCAGTGCAAGCTTCCCTGAAACCCAGTGACCCAAGAAAGGAGTCAAAGTGCAAGTCGTCCAAGTCTTACTGCCTCCTCGGTGTGGTAATGACAGCAGCTGCATTGGTGGCCGCCTACCTGTTGGCCAAACCAGAACTAGGATTTAAATGGATTTAAAGGGATTTGTTTCTTGACAGTATTTGGTTGTTGTACCTTAAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_08165245_08217042.mRNA True 1417 mRNA 0.52 10 8165197 8217042

Neighbor

gene id symbol gene type direction distance location
CI01000304_07961608_07968820 NA coding downstream 196248 7961565 ~ 7968949 (-)
CI01000304_07612069_07709665 NA coding downstream 455532 7612069 ~ 7709665 (-)
CI01000304_07464639_07466430 NA coding downstream 698767 7464235 ~ 7466430 (-)
CI01000304_07325899_07328203 NA coding downstream 836994 7325648 ~ 7328203 (-)
CI01000304_07303509_07309222 STARD7 coding downstream 853486 7302824 ~ 7311711 (-)
CI01000304_08218405_08218927 NA coding upstream 592 8217634 ~ 8218927 (-)
CI01000304_08329095_08386362 GFRA2B, GFRA2 coding upstream 112053 8329095 ~ 8386362 (-)
CI01000304_08510508_08532975 NA coding upstream 293428 8510470 ~ 8533026 (-)
CI01000304_08567281_08570808 PBDC1 coding upstream 350152 8567194 ~ 8570808 (-)
CI01000304_08605819_08615439 HTR7B coding upstream 387833 8604875 ~ 8617967 (-)
G423367 NA non-coding downstream 7500 8157485 ~ 8157697 (-)
G423356 NA non-coding downstream 16728 8148071 ~ 8148469 (-)
G422988 NA non-coding downstream 78407 8086447 ~ 8086790 (-)
G422967 NA non-coding downstream 100288 8064658 ~ 8064909 (-)
G422960 NA non-coding downstream 111365 8053610 ~ 8053832 (-)
G423337 NA non-coding upstream 2566 8219608 ~ 8220174 (-)
G423369 NA non-coding upstream 14952 8231994 ~ 8235291 (-)
G423375 NA non-coding upstream 19840 8236882 ~ 8237130 (-)
G423379 NA non-coding upstream 24818 8241860 ~ 8242079 (-)
G423448 NA non-coding upstream 87142 8304184 ~ 8304715 (-)
G422810 NA other downstream 512494 7630159 ~ 7652703 (-)
G422378 NA other downstream 1382151 6744679 ~ 6783046 (-)
G422354 NA other downstream 1533698 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 1681702 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 3492250 4661766 ~ 4672947 (-)
G423386 NA other upstream 645181 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 1351314 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 1519704 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 1936404 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 1973532 10190574 ~ 10192357 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002702 si:ch211-127i16.2 coding NC_007121.7 CM002894.2 19427474 ~ 19523752 (-)