CI01000304_07303509_07309222 (STARD7)


Basic Information

Item Value
gene id CI01000304_07303509_07309222
gene name STARD7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7302824 ~ 7311711 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_07303509_07309222.mRNA
TGTTGGTGATGATTAATGGTCATGTGTTCAATTTTCAAATTTCAAAGGCGTTTCCTGTTTCCCGTAGTTGCATCCCCTTTAACTCCTCTAGTCTAGCATGTTGTCATTATGGGACAGATTAGAAGAAGCTCTATGAGAGCTATGCTATAACTCCCCCATGTGGCCACAGCAAAACAGCAAGAGCATTTCTACCTTAACTGATCCAGGGGCCATATTCACAAAACATCTTAAGACTAAAAGTAGCTCCTTACTTGCCCATTTAGGAGAAACTCTTAAAAATAATGGGCGTCAGTCCTAATTTTAGTCACTAAGACCAAATCACAAACAATCCTAAACTGGCTGTTCTTGGCACTCCGCCACAGCAATCTGCCCAAAGACTCTGTGCACCATTGAGGCAAAAGGTGATAGAGCCTTGGGTGCTGAGCCTTCTACCCCTATAAATGCAATAAATATATTGATTTATAGATTTTAATCTGCGATGACATAACATAAAGGTTTGTTTGTATACAGGCAATTGGGATTGAATGATAGAGAATAAAACATTGCAGACAATTTAAAAAAAAAAAAAGAATGTCCTATCACAAGTTCACACTTATAAATGATTGAATAGAGTAAATGAGTAAAATAAGCGTATTTGGCGTGCTGTCCGAAGGGAACGAGGGCTCCGGGCTCAGAATTTAGCCCAAACCCAGGGTACTCCCCCATATCCCCGGGTGGTAATACGAACCAGCCGAAAGTGAGGAGTCGGGGTGGGGGAGGGATGTTGAGGTAATTAGGTGAGTCGGCTGTGTATACAGTATATATGCCTCCTCTCGAGCTGAATGGATAGACAATTTGAAGGTGCTCCTCCCCGAACTTTGTTTATAAAACATCATTCGCTGCTTGAATCTCTTGAGATGCACACATGCAAGAGGCTAACAATTAGCTGAACATATATACTTGTTTCATTAGTGACACTTAACCTACATGTTAAAATCTTTATTTGGTTATGGAAACATTTTTTTAAAAAAACCTTTATTTGAATATGGCAACATGATACCTTCTTTTACAATATTTCTACAACTGAATCACTGACAGAAACCCCTCTCCCATCAGCCAATCACTGTGGCCATAGTTAGTAAGCGTGCTGATATCATCCATAGCAATGAGGTCAACCCCACCCTTTCTCTTAGCAAGACCTTTCTCTATTCCTTAGTAAAAGTTGGTCGCAGCAGCTTTTTGAATAGGTTTTAAGAGGAAACTCTTAACTAGGAACTTTTTCTGCTATATTTAGGAGAGTGGTAAGATAAAATGTTTTGTAAATACGGCCCCAGGTGCATTGGATTTATGTATTTCAAAAAGGGCATTTATTGCCCATGTTAATTAATTAATTAATTAATTAATTAATTAATATATAGATAGATAGATAGATAGATAGATAGATTCATTGCAAGTTCTGCTCTGTCACAAATCCTTTCATTATAACCAACAAAATACTGTATGAACATGATGTCAATAAAAGATTCATTGCACTGAGTGGAGTAGACAGCTTCTTTAATTATAACGGGAGTTTTCGCAGGAGTGCAGCTTTGTGTACAAAATTTCTGGATTGACAACTGTATTTAAATGCGTGAATGAATGCGATTGACAGTGATAACTATAGATAGCAATGGACGGAACAAAGCAATCTGATACTGTATTGTTAAATTATCTGTGCATTAACTCTTGTACACCACTTTTTCTATGCAATGTGTTTTAATTTTATCACTAACTTTTCAAATAAGTCATTTGGTGACTTTTTACTTATGCATTTATAGATTTTTAAATATAAAATAGTTCTAAGCACTTTGTTTTATGATCTGTCAGTGGATATTTTGTTTTTCATTAATAAATAGGATAAGTTACTAACTGTTTGCATTTACTTTGGATTTATTGTCAGTGCTGGACTTGCAGTTCACCAGGGTACTTTGTGTGTGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGAGACGGCAGGCGTGAAGTTTAGTGAACAAATATAGATTGAGCCTACGCATGAATTTTACAAAAAAAAAAAAAAAAAAAAAAAAATCATAGTTTTGATGACAACTATTACTCCAAAATGAGACGATAGTAATAATATATAATAAGTAGGTGTGTCCAAGCTTCTGACTGGTAGTGTACATATGTACTTACACTAATTCTAATTACTATGCATGAAATAAATTATTCGCCAAGTCATTTCATCGTTACAGCACATACCAACCACGTGGTGGTAAGTCTGTTTAACCTTATAGTTGTAGAGGACCTTTACCATGGGTTGACTTAGGGTGAGTCATATGAACGTGCTGGTTGATCCAGGGTCTAGAACAATGAAGACAGACAGCCCTATCACCCTATCAGAATGAGAGGTGCATCCTCGACGTAAGAGATAGCCAATAATAACTCGCAAAGACGGAGATGGGCGTGTTCGTCATGCTAACTGGTACTCCACTGGAGAGGTGTGAGGGCATGAAGCTAACGCACGAAGATAAAAAAACGAAGATGTTGTCCTCCGTCCAGCATCGCCCTGTGTGTAACATAGGGGCCAGAGCTGTCCGACTGCAAAGCTTTAGCACTTTTAATCAAAGTGGTGCGGTAAGTAGCAAATCGTGGTTGGGTGAGCGCGTGGGCCTGCTGCTGTCATGGCTCCAAAAAGCGGGAAGGGGAACGAACAAACTGGCCTCCGAGAAAAAGAAGAAGGAGAGACTATTGTCTCTCTTCGCCAGCCACTGCAGTTTTGTGACAGGCCAGAGGCTGAGAAGGGCTCTTCAGATAGGAGAGCTGTACTCAAACCTGTACTCTGAGAGAAGCAGGTGGACACTCGTGAGCAGCATATGGCGGCGCCTGCAGAGCAAACACGCCCCCACTGGAAAGCTCATAGCAGCACTGGCTGGAGTCTTCATGTGGGAAGACGAGAAGATCCGAGATGATGAGCTGAGAAGGTGTGCATGGGAGCTGCAGGCACTGGAGGCAGTGAGGAGCCAGAATGTGACCCCAAAGACAGCCGTGCATGTGGATCCCGGCTGGGAGGTGGTCATGGAGAAGAAAAACTTCAGAGTTTGGAGGAGACCTATCGAGAGTAGCCATCTTTTTGAATACAGAGTGTTTGGTTCATATACAGACGTCACCCCCCGCCAGTTCTTCAATGTTCAGTTGGACACAGAGTACAGAAAGAAGTGGGACGCACTGGTTATCAAACTGGAAGTGGTGGACAAGGATGTAAACACAGGCACCGAGGTCGTTCATTGGGCGACGCATTTTCCATATCCTATGTACTCCAGAGACTACGTCTATGTGCGCCGATATCAAGTTGATATAGAAAACAACTTAATGATTTTAGTCTCCAGAGCTGTTAAACACCCCAGCGTCCCAGAGACCCAGGAATTCGTCCGAGTGCACTCTTACCAGTCTAAGATGGTCATCCGCCCACACAGGTCATTTGACGAGAATGGCTTTGATTACCTGCTGACCTACAGCGATGATCCTCAGACGGTCTTCCCTCGCTACTGCGTCAGCTGGATGGTGTCTAGTGGCATGCCAGACTTCCTGGAGAAGCTTCACACCGCTGCTCTCAGAGCTAAAAACATGGACTTCGGTCTCCACGACTACGTCAGCGTCGCAAAACCTACCCAACCCACCCAAGAAAGACTAGGAGCTGACAATGCTCACACCAGAGGCTCAAGCCAGATCTACGCCTGAGCATCTGGCCACAGCGATTGATGTACTGTGGCCAAATGACCCAGAACAGAATATATTATTAATTGAAGCCACAAAGAAAACCGAACCATCTATTCCCAAAATTAATTTATGCCATTTGACCAACTGCACTAGCTGTCAAACTGAGCGCTCGCATCCCTCACTTTTTGTGCTTTTAGTTTACTTCCTCTTCCTGTAGTGTGCATCTATGCCAGACTGCTGAGATGAGCCAAAATAATGCCGTTATTAATTGTAGACACTCATACCAAAGCAGTATTTCACTGCGCATTTCTTTATATCACGATCATCAGAATAGATCATATAGTTGAGATGCTGAAAAACAACAGGAGAACCGTGTACACGCCCCAAAAAAGCTTATACCCCCCCACAGCTTATACTGTGAACTGCTCTCAGCAGAACCAGATTGACTCCCCATCGTCCTTGTTTACTGTGTGAATGTTCATTGCCAGTAAAACCCAAACAGCCTTCATAGGATCACCAAAACCTGCTCTGGAAACAAAAGAGAGGTGTGTCTTATGCGAACCGCAGCATCCTCACGGACAGGCTGGACTTCCTCCTGTGCTCTACAGGGCTGTTTGAAGTCTAAAACATCTTTTGTACTCTGAACTCCAGCAAATGAGGACGCTATGAGAGTCAGCGATGCTGACTGACTCCATATTGTAATAAA

Function

symbol description
stard7 Predicted to enable lipid binding activity. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 2. Orthologous to human STARD7 (StAR related lipid transfer domain containing 7).

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_07303509_07309222.mRNA True 4455 mRNA 0.42 9 7302824 7311711

Neighbor

gene id symbol gene type direction distance location
CI01000304_07282197_07285838 NA coding downstream 16986 7281481 ~ 7285838 (-)
CI01000304_07218265_07232779 SMARCAD1B coding downstream 70045 7218220 ~ 7232779 (-)
CI01000304_07212382_07216898 SKA1 coding downstream 85926 7211830 ~ 7216898 (-)
CI01000304_07203008_07211715 NA coding downstream 91109 7202964 ~ 7211715 (-)
CI01000304_07183432_07198305 NT5C2L1 coding downstream 104519 7182622 ~ 7198305 (-)
CI01000304_07325899_07328203 NA coding upstream 13937 7325648 ~ 7328203 (-)
CI01000304_07464639_07466430 NA coding upstream 152524 7464235 ~ 7466430 (-)
CI01000304_07612069_07709665 NA coding upstream 300358 7612069 ~ 7709665 (-)
CI01000304_07961608_07968820 NA coding upstream 649854 7961565 ~ 7968949 (-)
CI01000304_08165245_08217042 NA coding upstream 853486 8165197 ~ 8217042 (-)
G422512 NA non-coding downstream 25578 7276999 ~ 7277246 (-)
G422473 NA non-coding downstream 174801 7127412 ~ 7128023 (-)
G422469 NA non-coding downstream 180313 7122251 ~ 7122511 (-)
G422468 NA non-coding downstream 182807 7119731 ~ 7120017 (-)
G422466 NA non-coding downstream 190450 7112155 ~ 7112374 (-)
G422442 NA non-coding upstream 10312 7322023 ~ 7325559 (-)
G422521 NA non-coding upstream 27177 7338888 ~ 7340699 (-)
G422528 NA non-coding upstream 40953 7352664 ~ 7354386 (-)
G422536 NA non-coding upstream 56177 7367888 ~ 7368822 (-)
G422564 NA non-coding upstream 99645 7411356 ~ 7440582 (-)
G422378 NA other downstream 519778 6744679 ~ 6783046 (-)
G422354 NA other downstream 671325 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 819329 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 2629877 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 3037623 4263846 ~ 4265201 (-)
G422810 NA other upstream 318448 7630159 ~ 7652703 (-)
G423386 NA other upstream 1550512 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 2256645 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 2425035 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 2841735 10160458 ~ 10163762 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002693 stard7 coding NC_007121.7 CM002894.2 17700016 ~ 17710637 (-)