CI01000304_07183432_07198305 (NT5C2L1)


Basic Information

Item Value
gene id CI01000304_07183432_07198305
gene name NT5C2L1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7182622 ~ 7198305 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_07183432_07198305.mRNA
GGTGTTTGTGAACCGGAGTTTGACACTTGAAAACATCAAGTGCTATGGCTTTGACATGGATTACACTCTGGCAGTGTATAAGTCTCCAGAGTATGAGAGTCTGGGCTTTGAGCTGCTCAGGGACAGGCTGGTGTCAATCGGATATCCACATGAGCTGCTGGGCTATTCTTACGACCCCACCTTCCCCACACGAGGCCTGGTGTACGATACTTTGTACGGTAACCTGTTGAAAATAGACTCCAATGGAAACATCCTGGTGTGCACTCACGGCTTTGAGTACCTGAGAGGTGAACAGGTTGATGAGTATTATCCAAACAAGTTCATCCAGAGGGACGACACTGACCGCTTTTACGTCCTCAACACTCTCTTCAACCTTTCAGAGACGTATCTTTATGCATGCCTGGTTGACTTCTTCAACAGAACCTCCAGATACAAAAATTGCCTGAAAGGGTTCAAACATGGTGACTTGTTCATGTCACACAGAAGCATGTTTCAGGACGTGAGGGACGCCATGGATCACCTTCACGATACGGGCACTCTGAAGGAACGAACACTGAAGAACTTGGAGAAGTATGTGATTAAAGATCCTCGTCTTCCTGTGTTACTGAACCGCATCAAAGAGGTCGCCAAAGTGTTCCTGGCCACCAACAGCGACTTCAATTACACTGAGGCAATTATGAAGTACTTACTGGAGTCCCCTGCTGGCTTTAAGAGCCCCAGGAAACCCTGGCGCTCCTACTTTGACCTGGTGGTGGTGGACACTAAGAAGCCCTTGTTCTTTGCAGGAGGGACAGTGTTACGACAAGTTGACACGGACACTGGTAAGCTGCGTATTGGCACATACACAGGGGACCTCCAGCACGGGACAGTGTATTCTGGAGGTAATGCCAGAGGATTATTCACATGTTGTTCTCATCATCATCATGATTTATTTGCTATAGGCTTGCATGAAGGCACTCCTTTTCCTTATGTCAGTTATCCTTATTCAACCCCTTTCTTAGGATCTTCTGATATTGTCTGTGATTTGCTGGATGTTAGGGGCAAAGACATCCTCTATGTGGGGGATCACATCTTTGGAGATATTCTCAAGTCAAAGAAACGTCAGGGCTGGAAGACTTTCCTGGTGGTTCCAGAGCTTGTGAAGGAGCTTCATGTGTGGACAGACAAAACCAGTATGTTTGAGGAGTTAAGACATCTTGACATCTTCCTTGCAGAGTTATATCAGCATTTGGACAGTGGAACTCAAGAGTGCCCGGATATTAGTGCAATTCAGAGCAGGATAAAGATGGTGACATACGGCATGGATCTGTGCTATGGGAAAATGGGCAGTCTTTTACGCTGTGGTTCCACAAAAACCCTCTTTGCCAGTCAGTTACTGCGCTATGCAGATATATACTCAACCACCTGCCTCAACCTCTTAAACTACCCCTTCAGCTACCTCTTCAGAGCCCCACACGTCCTGTTGCCACACGAGGCCGCTGTGGAGTCTCAGACCAAGGAGCAGATCACAGAGCTGTCAGAGCACATGCTCAAAAGCACAATCATCAAGCGGCAGTGTGAGTGTGACGATGGCGACTGTGGTCAAGATGATAATTGTGCCCGAAATAACCCAGCTTCATCCACAGAGACATAAGGACTGATGTTTTTATTTTTTTATATTATTGCTGTAAATATGAACTTTTTATTTAATGTGCATGTTGTACTTTCACAGTTTCCATTCCTGCCTTAAAACTGTGTATTGATATGCAGCACTTGTGTGGTTGGTTTGCAGTTTAGCTTGAGTATGACTCTGGCAGAAATTTGTGATTAAAAGGAATTTGCATGTCTTATGGTTTAAGTTAACAGCTGTTGTTTGTAAAGCAAGTGTAAAATCCTTATTTAACCATTTTATAAAACTTTTATATTCTGTGTTTTTAATTAAGAGCTTTTATAAAAGTATCTAGCCTTTAGTACGTCAGTCATAAAGGCATGAAAACTAAAGAACAGGGTTGCAGGATTTTGAGGTCTCATTGGTCAAATGTTTATTTACTTTTGTTTTTCATATCATAGCATATTATACAATAATAATAATGCAGAGACTGACATAGCCTATAATAACTTAAACTATAAAGTAACTCTAAAACTGTTTCTATATTCTGCTTATATGACTGATTTAATATATATATGTTTTGTTTATGTTTTTAGGCTTCTGTTTTTCATAAGCATAATGAATTGACAATTAAAGAGCTTTATTTTAGACTTATTCTGTTTTCATATTTATTTCTACTTTGATTTACCTTAAATATTGTTCAGGACAGACGCATGTGAAAGTTCCTGTTATGAGTTAAACTGGAGTTGTCTCTGTGTAGGAGCCTTTTAAACGATAAATTAGATTTTTTTATAGACCATATAGGAGTCGAGGAAGTGTACCGAAACGGCAAGTTCATGAAAACAGCTGAATAAA

Function

symbol description
nt5c2l1 Predicted to enable 5'-nucleotidase activity. Acts upstream of or within cellular response to xenobiotic stimulus. Is expressed in blood; eye; tail bud; ventral mesoderm; and yolk syncytial layer. Orthologous to human NT5DC4 (5'-nucleotidase domain containing 4).

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_07183432_07198305.mRNA True 2443 mRNA 0.41 16 7182622 7198305

Neighbor

gene id symbol gene type direction distance location
CI01000304_07065444_07081535 GNAZ coding downstream 100652 7065219 ~ 7081970 (-)
CI01000304_07051182_07056250 NA coding downstream 126372 7051128 ~ 7056250 (-)
CI01000304_06935639_06967113 DEPDC5 coding downstream 213568 6935528 ~ 6969054 (-)
CI01000304_06931421_06933921 YWHAG.S, 143G2, 143G1, YWHAH, YWHAG.L, YWHAG2, YWHAG, YWHAG1 coding downstream 248563 6930738 ~ 6934059 (-)
CI01000304_06914589_06924928 SLC5A1, SGLT1 coding downstream 257470 6913830 ~ 6925152 (-)
CI01000304_07203008_07211715 NA coding upstream 4659 7202964 ~ 7211715 (-)
CI01000304_07212382_07216898 SKA1 coding upstream 13525 7211830 ~ 7216898 (-)
CI01000304_07218265_07232779 SMARCAD1B coding upstream 19915 7218220 ~ 7232779 (-)
CI01000304_07282197_07285838 NA coding upstream 83176 7281481 ~ 7285838 (-)
CI01000304_07303509_07309222 STARD7 coding upstream 104519 7302824 ~ 7311711 (-)
G422473 NA non-coding downstream 54599 7127412 ~ 7128023 (-)
G422469 NA non-coding downstream 60111 7122251 ~ 7122511 (-)
G422468 NA non-coding downstream 62605 7119731 ~ 7120017 (-)
G422466 NA non-coding downstream 70248 7112155 ~ 7112374 (-)
G422439 NA non-coding downstream 154117 6986869 ~ 7028505 (-)
G422512 NA non-coding upstream 78694 7276999 ~ 7277246 (-)
G422442 NA non-coding upstream 123718 7322023 ~ 7325559 (-)
G422521 NA non-coding upstream 140583 7338888 ~ 7340699 (-)
G422528 NA non-coding upstream 154359 7352664 ~ 7354386 (-)
G422536 NA non-coding upstream 169583 7367888 ~ 7368822 (-)
G422378 NA other downstream 399576 6744679 ~ 6783046 (-)
G422354 NA other downstream 551123 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 699127 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 2509675 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2917421 4263846 ~ 4265201 (-)
G422810 NA other upstream 431854 7630159 ~ 7652703 (-)
G423386 NA other upstream 1663918 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 2370051 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 2538441 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 2955141 10160458 ~ 10163762 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location