RNA id: CI01000304_08692093_08712203.mRNA


Basic Information

Item Value
RNA id CI01000304_08692093_08712203.mRNA
length 917
RNA type mRNA
GC content 0.47
exon number 6
gene id CI01000304_08692093_08712203
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8691959 ~ 8712203 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAGTCTACGGAAGTGGATCCGGGGTTATTCACTGACAGCTACTGCAAAGTGTGCAGCGCTCAGCTTATCTCTGAGTCACAGAGAGTCGCCCACTATGAGAGTCGAAAACATGCAAACAAAGTTCGTCTGTATTACATGTTACACCCAGTGGATGGTGGCTGCCCTGCAAAGAAGCTTCGGACAGACAATCCAGCAATATTAAAAAATCTGAAATTAAAAGAAATGCTTCTCTCCTGTGTGGACGTGATGATTGTTTCCCGTCAAGGTCAATGTCTAAAAGGACATTCACGGTTTAGCTGGAGGTTGGGCAGTGCGGAGGGAGATGTGGACAAGAACAAGTGCTGCACGCTGTGCAATATGTCGTTCACTTCAGCGGTGGTGGCCCAGTCGCACTACCAGGGCAAGATCCATGCCAAGAGACTGAGGCTACTGCTGGGGGAACCACCTGCCATCACATCTAAAGAGGTGACGGCCAATTCAGAGCATATGGTGACTGAAGAAAGTCCTTCCATACATGGGAGGCTCTCACACCGCTACTGCCAGATGTGCAAGGCCTGGTTCAACAACCCTGGCATGGCTAGACAGCACTATGAAGGCAAGAAGCACAAAAAAAATGCAGCCCAAGCTAACCTCCTAGTACAGCTGGGTAAAAGTCTGGAGGATGGAGATGAACTGAACGGCCTGAAGCGGAGTCACACATGTGAGGTTTGCAGTGTTACGCTCAACTCCGTGGCACAATACCACGCACATCTGCAGGGCTCCAAACACCAGAACAAGTGAGTTTCAGCCACTGCATCTCATCTTGAACAAAAAAAAAAAAAAGACAAGAATCAAAGGTAAACCCGAATCACATAATGATATGTGGCAGAAAATACATCTCTTCAGCAACATCAAAATCCTTTTTTTTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486442 lncRNA downstream 18947 8672676 ~ 8673012 (-) True G423589
TU486441 lncRNA downstream 19379 8671798 ~ 8672580 (-) True G423588
TU486409 lncRNA downstream 149273 8542460 ~ 8542686 (-) True G423557
TU486402 lncRNA downstream 177718 8513906 ~ 8514241 (-) True G423551
TU486380 lncRNA downstream 213295 8478182 ~ 8478664 (-) True G423529
TU486478 lncRNA upstream 236841 8949044 ~ 8949311 (-) True G423615
TU486849 lncRNA upstream 295405 9007608 ~ 9008693 (-) False G423960
TU486850 lncRNA upstream 295405 9007608 ~ 9008693 (-) True G423960
TU486864 lncRNA upstream 325410 9037613 ~ 9098217 (-) True G423972
TU486898 lncRNA upstream 449599 9161802 ~ 9162014 (-) True G424004
CI01000304_08680653_08681838.mRNA mRNA downstream 9570 8680131 ~ 8682389 (-) True CI01000304_08680653_08681838
CI01000304_08605819_08615439.mRNA mRNA downstream 73992 8604875 ~ 8617967 (-) True CI01000304_08605819_08615439
CI01000304_08567281_08570808.mRNA mRNA downstream 121151 8567194 ~ 8570808 (-) True CI01000304_08567281_08570808
CI01000304_08510508_08532975.mRNA mRNA downstream 158933 8510470 ~ 8533026 (-) True CI01000304_08510508_08532975
CI01000304_08329095_08386362.mRNA mRNA downstream 305597 8329095 ~ 8386362 (-) True CI01000304_08329095_08386362
CI01000304_08727439_08731885.mRNA mRNA upstream 15113 8727316 ~ 8732117 (-) True CI01000304_08727439_08731885
CI01000304_08754563_08783858.mRNA mRNA upstream 41790 8753993 ~ 8783858 (-) True CI01000304_08754563_08783858
CI01000304_08789401_08798907.mRNA mRNA upstream 77025 8789228 ~ 8799033 (-) True CI01000304_08789401_08798907
CI01000304_08819813_08827793.mRNA mRNA upstream 106745 8818948 ~ 8827793 (-) True CI01000304_08819813_08827793
CI01000304_08829163_08833955.mRNA mRNA upstream 116582 8828785 ~ 8833955 (-) True CI01000304_08829163_08833955
TU485601 other downstream 1039256 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 1908913 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 2060460 6631086 ~ 6631499 (-) True G422354
TU484957 other downstream 2208464 6477451 ~ 6479033 (-) False G422250
TU486232 other upstream 150020 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 856153 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 1024543 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 1441243 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 1441656 10153859 ~ 10164330 (-) True G424458

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005033 False 976 mRNA 0.49 7 NC_007121.7 20270831 ~ 20339113 (-)
bowfin (Amia calva) AMCG00021034 True 1272 mRNA 0.52 13 CM030127.1 42625384 ~ 42919615 (+)