RNA id: TCONS_00005033


Basic Information

Item Value
RNA id TCONS_00005033
length 976
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_002711
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20270831 ~ 20339138 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atacacacactgacacaGACAGCACGCGCAGCATCACTTCACACACTCAAGACTGTACGATCATCCATATCATCTGACGGACGGTCCTGGACACCTGTACCAGCGATACAGTCAGCAAATACAAATGAAGTCTACAGAAGTGGATCCAGGGTTATTCACTGACAGCTACTGCAAAGTGTGCAGCGCTCAGCTTATCTCTGAGTCACAGAGAGTCGCCCACTATGAGAGCCGAAAGCATGCAAACAAAGTTCGTCTGTATTACATGTTACACCCAGTGGATGGTGGATGTCCTGCAAAGAAGCTTCGATCAGACAATGGCAGTGCGGATGGAGACGTGGACAAGAACAAGTGCTGCACGCTCTGCAATATGTCTTTCACTTCAGCGGTGGTGGCCCAGTCACATTACCAGGGCAAGATCCATGCCAAGAGACTCAGGCTCCTGCTGGGGGAACCGGCTGCCATCATGTCTAAAGAAGTGACAGTCGAACCAGATCACATGATGGATGAAGATTGGAAGGATGGAAGTCCGTCTACAAATGGCAAACTCTCTCAGCGCTACTGCCAGATGTGTAAAGCCTGGTTCAACAACCCTGGCATGGCCAGGCAGCACTACAATGGCAAGAAGCACAAAAAAAATGGAGCTCAAGCAAACCTCCTCGCACAGCTGGGTAAAACTCTGGAGGACGGAGAAGAGATGAACGGCCTGAAGCGGAGTCACACATGTGAGGTCTGCAGTGTTACGCTCAACTCTGTGGCCCAATACCACGCACATCTGCAGGGATCCAAACACCAGAACAAGTAACTTGAAGAACAAATGAAGTCTGATGGGTCTGGTTTATTTCATCTCCAGTCCTGTGAGTTTTTGAGGATTGGTCTATGAATGTCCCGGCATCTTCTGCCTCTCTGAGACGTGACAGTGATATCGGGTCACATTCTCTTAATCCACTGTTTTTATGATATGGACACTATCAGTGCA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-68 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleus. Orthologous to human ZMAT4 (zinc finger matrin-type 4).

Ensembl:

ensembl_id ENSDART00000144378

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006033 lncRNA downstream 33860 20234014 ~ 20236971 (-) True XLOC_002710
TCONS_00005031 lncRNA downstream 119503 20143797 ~ 20151328 (-) True XLOC_002708
TCONS_00005030 lncRNA downstream 164819 20103615 ~ 20106012 (-) True XLOC_002707
TCONS_00006032 lncRNA downstream 274100 19931298 ~ 19996731 (-) True XLOC_002705
TCONS_00005758 lncRNA downstream 749127 19518885 ~ 19521704 (-) True XLOC_002703
TCONS_00005037 lncRNA upstream 109526 20448639 ~ 20456007 (-) False XLOC_002714
TCONS_00005039 lncRNA upstream 113019 20452132 ~ 20453993 (-) True XLOC_002714
TCONS_00006034 lncRNA upstream 277663 20616776 ~ 20618813 (-) True XLOC_002720
TCONS_00005059 lncRNA upstream 503805 20842918 ~ 20888760 (-) True XLOC_002724
TCONS_00005071 lncRNA upstream 1231083 21570196 ~ 21572296 (-) False XLOC_002730
TCONS_00005032 mRNA downstream 95713 20158838 ~ 20175118 (-) True XLOC_002709
TCONS_00005028 mRNA downstream 164819 20103067 ~ 20106012 (-) False XLOC_002707
TCONS_00005029 mRNA downstream 165278 20103585 ~ 20105553 (-) False XLOC_002707
TCONS_00005027 mRNA downstream 205682 20033900 ~ 20065149 (-) True XLOC_002706
TCONS_00005026 mRNA downstream 469010 19798476 ~ 19801821 (-) True XLOC_002704
TCONS_00005035 mRNA upstream 12300 20351413 ~ 20357013 (-) True XLOC_002712
TCONS_00005036 mRNA upstream 68775 20407888 ~ 20445549 (-) True XLOC_002713
TCONS_00005038 mRNA upstream 109527 20448640 ~ 20453995 (-) False XLOC_002714
TCONS_00005041 mRNA upstream 121438 20460551 ~ 20481763 (-) False XLOC_002715
TCONS_00005040 mRNA upstream 121438 20460551 ~ 20481763 (-) True XLOC_002715
TCONS_00005004 other downstream 2643578 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005003 other downstream 2700679 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 2727809 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 2751797 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004997 other downstream 2769427 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00005042 other upstream 144701 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005057 other upstream 321304 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 569329 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 701544 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005070 other upstream 1204788 21543901 ~ 21544517 (-) True XLOC_002729

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_08692093_08712203.mRNA True 917 mRNA 0.47 6 CI01000304 8691959 ~ 8712203 (-)