RNA id: TCONS_00005027


Basic Information

Item Value
RNA id TCONS_00005027
length 2198
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_002706
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20033900 ~ 20065149 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAAAGGGGCACTTTAGACACATGACCAAAACATAAAGAGGCCTAAACATGATTATTTCCAACTGGCCAGATTCCTGACAGCAATTCTACACAGAGAAACAGAATTAAGGTTACAAAAGTATACATATAACGCACAATTTGATATGCACAAACACTCTCAGTGTGTTAAATTTTAGATCCTATCCACTGAAAAGGATGCAATTCGTCAGATCATGTTAATCTAATTTTCACTGATATGCTGAACACGGCTTCGCACAGCATTCACTGTGACTAAAGGTAAATTTCTTAAGTAACCCTACAAATCTGTGATTCTGATGTGATGCTGTAGCAGGATGTTGAATAGATTCAAACGTTTCACATTTGCAGGGTCTTCAGTTCAGACCTAAATAGTGTCAAACAGGAAGAATCTTAAAAGAAGGAAACCAACgccaccacatacacacacaaacacacacacacacacacccactcatCTGACTTCTCCAAGAGACAGATTTAGACTTCATCTTAGACAGGAAGAATGGCTGACAATATACCTAAGGTCAGTCCGCTATTCACAGCCATGCATCTCATAGTCATTCAGACAGCCTGAAAGCAGAGTGCAATCAAAGGAGAGCGTAGAGAAAGAGAAAAACAAGGTAAAGAAAGGTCCAGCGGAGGAGCTATGGAGGAGGACATCAGGAGAAAAGGGATGCTTTACTTTCATCAGCAGCGCTTCGGCAAGAGATGGAGGAAAGTGTGGTGTGTGTTGGTGGCGGAGGGCAGGCGCAGTGTGGCTCGACTGGAGCTTTATGAGCACAAACACTCCTCCTTCAAACAGGGCACCAACAAACGAAAACCCGATTACAAACAGGTGATCCGCCTGCGAGAATGCATTCGCATTTCCAACTGCGACATGGCGGATTGTCCGAAAGACTGTGCCGCTTTTCTGCTCGAGACCTCTGACAAACTATACGTGTTTGCGGGTCTGCAGTCAGAGGTGAAGGACTGGATCAGCAGTCTCTGTCAGCAGGCCTTTCGTgatGTGGAGGCTGAGCAAAGATCACAGAGAGAAAGATGCGTCTGTTCTGAAGCTCCAGGCACTTCACATGTCAGAGAAATGCAGGACAATTCGCTCTATGATACAGCGGAGAACGTTCGAGATGTTCTGGTCATAGCAGTAAGCACAGAAGCTGCAGTTCGGTGTGGTCTGTATGGTGAATACGTCCTCACTCCTCTACAGGACTGTATAGTCCTGAAGGATCTGAAATCGAAGCAAGTGCTTTTTAAATGGCCGTACTGCTATGTAAGGAAGTTTGGACAAGATACGCTGTCTTTCTCCTTTGAGGCTGGCCGCAGATGTGAGTCCGGAGAAGGGAATTTCGAGTTTGCAACCCATCAGGGTGAAAGACTGTTCAATGCTGTCAGTGCAGCCATCCAGAATCTACCCAGACCATCCGAAACGAAACCTATCAGCCTTGACCAAGCAGAACAAACTAGAGCTCAAGAAACCACGGCTGGAACATACAACGACACCATAGGAAGTCAACCGTATGACTTTTTACTTGAGGGCAAGACGCAGAAACCATCAAAAATGCTCAACCCAGCTAGAAGGAGCTTTTCTTTGAACTCAATAGAGCCACAGATCGAAAGTCAAGAGATAAGCGACAACTTCAACCCTGAGAATCAGGAACCAGTCTACGCCAGAGTGTCAAAAACTCAGCAAAAAACCACTTCCCCGACCAACTCTCAAATGCACTGGCAAAACTTGAGAACAGCTCTCCAGCAGTCTGCGTTTCTAACAGATGCTTTTAAAAGCGACCCCGATGTTTTGCCTGATTTACCAATTTCTTGGGATGGCTATGAAGAGACAGAGATATCTGAAGATTGCATCGATTTTTTGGGTGACTCCATCCAGCAATTAGCAATTAATGACGCATTGCAGACCACCAGTGAAGAAGCAATTTATGCAGATCCACAGGATGTCCAGGACGACGCTGAGTGGGATGTCAGTGGTGTGTACGATGAACCAGAGGAGGTCATGATGGCTAATCAGAGAGCTCACGATGGGGCAAATCACCTAGCCGAGCAGGACAACTTCTACAGTCCTGACACGAGTGAAACACAGGCCACACACTCTCCCTCTGATCTAGCTGAAAATTCAGATGCCATGTTCTCAATTTATGACAATTTCAGATTGAAGGGGAAGCGAATGTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000182603

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006032 lncRNA downstream 37169 19931298 ~ 19996731 (-) True XLOC_002705
TCONS_00005758 lncRNA downstream 512196 19518885 ~ 19521704 (-) True XLOC_002703
TCONS_00006031 lncRNA downstream 941294 19088996 ~ 19092606 (-) True XLOC_002701
TCONS_00006030 lncRNA downstream 1746957 18284414 ~ 18286943 (-) True XLOC_002698
TCONS_00006029 lncRNA downstream 1750944 18274014 ~ 18282956 (-) True XLOC_002697
TCONS_00005030 lncRNA upstream 38466 20103615 ~ 20106012 (-) True XLOC_002707
TCONS_00005031 lncRNA upstream 78648 20143797 ~ 20151328 (-) True XLOC_002708
TCONS_00006033 lncRNA upstream 168865 20234014 ~ 20236971 (-) True XLOC_002710
TCONS_00005037 lncRNA upstream 383490 20448639 ~ 20456007 (-) False XLOC_002714
TCONS_00005039 lncRNA upstream 386983 20452132 ~ 20453993 (-) True XLOC_002714
TCONS_00005026 mRNA downstream 232079 19798476 ~ 19801821 (-) True XLOC_002704
TCONS_00005025 mRNA downstream 232249 19723025 ~ 19801651 (-) False XLOC_002704
TCONS_00005023 mRNA downstream 510148 19427474 ~ 19523752 (-) False XLOC_002702
TCONS_00005024 mRNA downstream 535986 19431403 ~ 19497914 (-) True XLOC_002702
TCONS_00005021 mRNA downstream 1021966 18999841 ~ 19011934 (-) False XLOC_002700
TCONS_00005028 mRNA upstream 37918 20103067 ~ 20106012 (-) False XLOC_002707
TCONS_00005029 mRNA upstream 38436 20103585 ~ 20105553 (-) False XLOC_002707
TCONS_00005032 mRNA upstream 93689 20158838 ~ 20175118 (-) True XLOC_002709
TCONS_00005033 mRNA upstream 205682 20270831 ~ 20339113 (-) False XLOC_002711
TCONS_00005034 mRNA upstream 221623 20286772 ~ 20339138 (-) True XLOC_002711
TCONS_00005004 other downstream 2406647 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005003 other downstream 2463748 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 2490878 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 2514866 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004997 other downstream 2532496 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00005042 other upstream 418665 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005057 other upstream 595268 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 843293 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 975508 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005070 other upstream 1478752 21543901 ~ 21544517 (-) True XLOC_002729

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_08510508_08532975.mRNA True 1625 mRNA 0.48 5 CI01000304 8510470 ~ 8533026 (-)