XLOC_002697


Basic Information

Item Value
gene id XLOC_002697
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 18274014 ~ 18282956 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006029
GTCAGTGGTTAAAGgtttacaaaatatcttcctttgtgtttaacagaagaaagaaactctaatAGGTTTGGACTAAGTGATGAGAGGAACAATAATGagttaattttcagttttgggtaaaaaAAGGCTATCCCTTTAGACAatccttttaaataaacttttcttacttaaagtattttatttaccaaATTGGCAGATAATCTCTTTTTTAAAGGAAAACCTCTCTTAATTTGGATGCAAAAATGCTTATTATTATGTAGGTATttgaactaaaaacaagacaaaactctaAGAACGAAAAGCATAGATGACAAATGCAAGATAGAGGCACAATTCTGTTCATTATATTCATAAAACATTAGCATATATTAGGCGTGTAATAGTTCAAGCTTCTCAAGGTTTGATATTTTCTGTGATTTTGTGTCATACTTTTGGTGCAGTTTGAGCAGAaggtatttctttattattttattactctaCTAATTAATTAACCATTTAACTAAAACAGCTTGCTTTaactcaaaaaggtttttttAATGCGATAGAAAAACCTGCATCTTTATGCCTAGAATAACTATTTTGAtagatatattttaaacattgtgtgtcaaaaaatcataaacatcattttttattagttttttagtttATTAGTTTTAATTGCTTATTATTGTGCTCATTTCTGTTATGCTCCATAATGCATGCATGGCAAGTAAAAAATAGAGCCTGATTACAAATCCTTGATATTATGTCTGTTTATTAATACAACAGCATGAAACGACAGctaaattaaaaacagaaatgctGTAAATTGGGAAGATTAGAGGAGCCGACTTGGATCATATATGCCTCATTACATCTCCGACATCCATTGACTTTGTCAGATTTGTGCAGAGACCAtagaaatgaatggatgaaaaatcataaatgttcattacttcTGTAATAAAACAATaggtcaaactttattttaaggtaaaattgaagagtttagatgcaaaacactttaagtgccgtctgaaatttccatcggaaaaggacttttttttttgccataaaagtgatattaaagAACATGCACACAGCaacctgataaaaatgctcattttagagaacaatttcagatggcatgtaaaggtttttgcatctaaactcttcaattcttgatattaacaaaacattaagatgtagaataagatcatgttGTACATATAAGAACTAATAAACAAACACTATATTAATGTTAAGCTGATTAAAATccagtagttaatagtgggaACTGGTACTGTGCAATCTAAAATAATCAATCCTGAATGAATGGTAAAGATAAACATTtctgaaattatttatttcacaaagtTATTTTTTTCTGCAGCAATATTTCAGTCCAACAGTGGTCTATATTAGAGTATTAGATAGATCTGATACTCCAGTGGAGAAACTGGTATTCAGATGAATGGGAAGACGAAAGCTGAGAGCGTATCAGAACTGCATATAATTTTTCTGCCTTAAAATAATCTAGAAATGCGTAGGAACCATCTGATCCTATCAGCTATTTGGATGAGTTACCTTGACTAGATAATCTAAGCTCTTAAACCATCATTCAAAGCAACAATTCTCCTCCTCCACAAAGTCGCCAAATCATGAAGCCTTATGTAACAGTCTCTTCCTATTATTCTGACAATTTGCTGCTTTACGGTCATTTACGTAAGGCTGAGGACGCCCATGCAAATTCTCTTTGCTTGTTGTTTGAGTATTTAGCCtagttgtttttaatttgttgaaatgaaatctaaaaaaaaaaaaaaaacagttttattcatatttgtgtGTTTTAACACACTTTAGTATGAGGGGAAATCAGTTTTGCTTAATAGAGTAATCCCTAATCAGGGATTCATGAATTAATAATAGATTTCAATGCCATCACATTTCAATTTGCCACAAGGATCATAGTTGGGCACAGTGTCTTTCGATGAAAGTAGGGTTAAATCAAAAACTGTGTTCCGTGATGTTTACAAAGCAAAATATTTGCAGAGGCTTTTACTAGAAAATATCCAAGCAGGTGCTGTTAAGCTGCggagaaattaaatgaaaaataaataaataaggtaaatGCAAATTCTCCATCTCAGTCTGCAAAAGATGTTCTCTGAAAACAGACGAAGCTAGTGTAATTCGCTAATATTAAGAGAGCACTTTGCAGGCAAACAATAGACCAGTGCGGTTCATTCACATGAAAGCAAAATTACAGGAGAAAATATTCAGAGCTTCACAGAGTTTCCCCCTCCTGcttgtttgtcttttttcccCCTTGTGTTTTGGGTCCTGGTGTCTTCTGGGAACACATTTTTCCTCAAGGGTAGGATTTAAAGGAACAGAAGACTTTTATACTTCTGCGCCGACTCTCAAATGAGTGTCTAATGCAAATATCCAGAAGGACTGGAAGAGGCCTGcgagaaaagaaagaagaaaataaagaaagTCAGAGGGTAGAAATTTCTTCTCTCTGCCCATATTCTATGGCAGCtgctgaataaatgaatcaaaacgGTAATTGCAGCATTTTATCTCAGTTTGTAATTCTGAGAAAACTAGATTGACTTGGAATTCTGAGCTTTTAGTGGAAATTGTTTATTCACAATTCTGAGTAAAAGGTCAGAAATCAGATTTTAAATTGCAGGTTTTTTTCTGAGATATTAATTCACATTtcctgtggcgacccttgataaataaagggactaagccaaaggaaaatgaacaaatgaaatacAGTAATTGATTTACATTTCTGTGGAGGTAGAAAATGTTGAATTCCAAGATCTTTATAACTTGAGATACCAATTTGCAATTCTGAGAAGGGAAAAATCTAAATTGTGAGATGCTGAATTACAATTGTAGCATTATAACCTGCACCAGTGAGGTGTATTTGCAATTATGTGCTTGCAATTATGAGAAGAAATGTTCAAAACGTACAGTTGTACAAAAGTCAAAATAAGTTTAATTGAACTTATCAATTctgagaataaaaataaaagttaaaattgaAAGAGGATGTTGTCGTTACGGTTTGGAACTTCAGGGGGAAAAATATGAATTCACATTTCACAAATGCTAACTTGGAAAAACAAGTTTGTAACAGCATCCATTAATTTGCAGTTCTGACAAAACAAGTCAAAAATCGCACAAAGTTGACTCACAATTACTAGTTTGTAACTTAAAATAAGATATCAGTTTACaattctaagggtgctttcacacctagacttttgtttccgAATCGTGTTTCcgcgcggttcatttggcatactgtatgtgaaaccagcaatcgccTTGAAACCAATGATCATCCGAGATCAcatgaatgaggtggtctcgggcttgattgaaacgaactctggagcgaatCGATTGTAGTTAAAAGGCAATATGATCCAGCAAACcaacgaaccaggctatatcacagtgtattatggatataaTAGGCATATATGGCTAAATGAAGAGGGAATGATCCCAGCAGACgtacaacatcataagacattttaatattaggttagatttaggtcatgacgtcaggtgaccaaaatttaatgtctagtcaGCATCAAACGTTTTTTTGACGTCCAATGATGacatcaaattacgttgatatttggttgattttaggttttgttggaaggtgaccaaaatccaaagtccGATAGATGTCATAATGCTAACATCCACACAaagtcaaggtgtaacatgatgagacattgatttttggttaattttaggttggacattggacattggcCTGATGTttggttctgacgtcaactcacttttcatttccaaacaaaatccaacatcctaatgacattggggtacaatgtcaatatgaCCTCATGTTGATTACATTTAGAAACATTGCAGTATGAAAGCCAACTgcaccaaaaataaaatgcaacattCTAACTATTTTAATTCCTGTTTCGGAAAAAAGCAATCCATCTACAGATGTAAAAGCTTCTTAAGATTCCATTTCTAGATctgtaataatttaaatgtttattaaatcacAATAATGTGACGTTGAATTGCCAAAAATCTATTGATATGAATTACACTCATAAGAAATAGCATACAAAATGTGGGATTTAAAAAGGAGGTTAGAATTGTGAAGATGCaactataattatttttgtttttattgtttattccatGTGGACGCAAGCTTTCATAGCTTTTTCCTCTAATGGCCAGCCATTAAATATGGGGGCAAAAGTCTTGGTGAAAGGAGCTGTATAcagtacacgcacacacacatacacacacacagaaacatacaTCTGCTCATCTGTGCAGAAATTGGAGGAGAAACCCTTCGCTTATCTGCAGGCTTGCACATGGCTGAGAGGTAGCGCTGTTGTCAGTGTGTGGAGGTTGGCCCATGAGGCTCACATCTGCTGCTATTGTGGACTTGGCTCTGTCACCATACTTATTCTCTGTCTACTAAATCTGCCACATTTAACCAGAGCTCCAGCTCACAAAACTATCAACGCATCAAATGTTGTAGTTAACAGCTCAATGTTGGACTAAATGACCAGAATGGCAAAAATTGGATCAAAGAGCCGAAGTTTCTGTTCCAAAATCCAGTGAGCTGCCATTTCACCTACAACAGAAAGAATCCTGGAAATCAAGAATTATCTAGAGTAACCAATCGAAATGCTCTACAAGTAATTGTTTTGGCTAAACTTGACCTTCGGTTGTGGACACTGAGTCTGAATGAAAGACATGATTCAAGTTAGCTGGACAGGTTTAAATGAATGCTTTGTGGCCAGGacaattattatgcattatgttttagaaatgtttatgtttttaaagtatttatgtttttaaaatcactttcaaACACTTTAAAGTGGTTCAGATGTTGACATCTTACATGACAGTAgaaactaaatgtattttaaactaCACACATTGGTACTTTATTCCATTTATCTTTTTGCTGTAATTAGGAATTGGAAATTGTTTTAATTGAGATTAAATATTATTCTGGACACAATATTTTTAACTCTAAATTTTATGAAtgaagtgaattaaaaaaaaaaattgctgaaatgttaataatttactGGCTGCAATAATTTACTAGTTCTTTTAATAAATGCAAGGCTTCACAGCAAAAGAAACATGGCTCAAATGGCTGTATGCAGCCTACACTAACCTAATTGtatcattatttattaacaagatGGCTTCAGTCAAGATCAGAGGACTAACAGATGTACATGAATATGTTCACTAACATTTAAGGTGATTTATAGTACCTGCATAAGCCTGTGTTGTTAGTTTAATTGGTTGTTAAGAGAGAATGTTGTGATTGACCATTCAGAATCAAATATTCCAGAGTTAACAATGGGGTAAAGTAATGCCAGACATCTTTTTTGAGATTCATTTTCactttaactacactgtaaaaaaaaaaaaaaaaatctgattttcacaACAATGCTGTAatctttcacagtaaattacattagtatcacttTACAAGATTAACGGTATAATTCACAGTAATGTGTTGTATTCATAATGTTATTGTGAAATTAttgcaggtagcatgattacagcaacttactgtaaaaagggctatatcttttgcatgcTAGTTATATGAGTTTAAAGGCtgcgaaaccacatacttccatactatacagtatgctaaaattagtatgcaagccaagtagtataaaatcagtatgcgagaagtacccggaaaACTTATTACTTCCGGTGAGGTTctaaagtgcgcatcccatgcatgctgcgctatcccatgatgccccgcgagagaattcatgaattggagtgaagcgacgcaactgatgcaggtagatCACGTgcccatgacaaaatggcagatgtagtacattcAAATTCCATTCaaaacttttcacattcatactgtatagaacgtacttttctaacggctgagtagtacgtttaaattcaaatgcagtacctactgagtagtaggcgctTCAGGACGCAGCCCATTTCTTTATTTCATTCaacatagacattaataaaaaagaACTGTTTTGCTAGTATTGGcacttttttgccttttttttttttttttttactgtgaaagtaatgcaattattagccagtaatttactgtgaactgaaggtcatttttttacagtgtaaactatAAAAGAACTAGCAGAAATATGAATCTTCATTGAATCAATTAATTGAATCATCTGAATGAACAAtggaatgaaacaaacaaaaaatgaatcaGGATTCCAGCCTCTGTGAAAAATAATATAACCAAGCAAGAACTGCCGAAATATGCTAGCACAGAAGGATTTAAATACAGCtactttttttgttgaatcatttatttaaatgaatcgtTGGATGAACAGATTCACTCAAAtatacactttcttttttttctttaagccaTCTTAATAAAGAGATTCACTCAAAATAATTTGATCTCCAAAGACCATGATGATCTCTACAGTAAAGTAAAAGCAGCAATTcctataaatattaaaataaaagggtttaaataaatggatgaatcaGATGAATTTGAAGAAACCTTCATTAGAATCAGATTTTCCAGTTTATTTGCTCTAATGAATAACATATATTGAATAGTAAGAATTCATCAACACTGTCAACATGGTTTGTACTTTTTCACCCACTGTCTGTCACATTGAATTATGGTATTGTAGTGTTGGTAATATCTTTAAACTGGCCAAAAGCACAGATTTTGGAAAACATCTTGATGCTTTCTACCTTTTGGAACATCTTTCAATATTAGCAGTGCCTTAAAATTCTGCCTACATAGGCATCACGCTAGCTTTTGGAACAGAGACCCAATTTCCTCTGAATAGGATTTCATTACTAATATAAAATTGGCCATAATGCAATACAAAACCCACCCCAACCCAAACGTATTATAATCAATGACCAGGAAATTACGTTTTTTAGGCAGAGAAAATGCAAACATGACAGAAGCATAGTCTGTTCAACGCACTGTTCTCAGATCATCGATTTCCCCAAAAAAGCCATGTTTTCTGAATTCTTCTATTCTGGAGATATAAATGTTTCATAATCTGAAAAACAGACACAGTTTAAACTGACAGTACTTCTATCccatgctgttttgtttttatgtttgtgacatttcctgtcttttttttcttcttctgtgtaTTCCCATTGTAGTTATCTGTCTGCCACTTTTGAGTGTCATATTTGGGAAAAAGGCAGATTTTTGATTTGGTATTTTGTCTAGTATACAGTTGGCCTATTTGTTGCAGCAGCTCTCATATCCTTTCTCACTATTTTCTGAGCACTTGATATATCAACAGCaaaagaatatataaataaataaatgcttttgttaAAATGACGTCTGTTTCTCAAGCGCATCCGGCATGTTCAAGGTTCCTAGCCTTACATTATTTGCTTTTTGCTTTGCTGCGTCTGTAAAGCAGAGCCACTTCATGTGAAAGAACAGATTCCTCAAACTCAGTCTTTTAAATGGAAAGTTTAAATCGAGTTTTAGAAGAGAGTTTTAGAAAGATTCGTGAAATCACTGCTAATTGCGTAGATATCAATGATCTGCGGTGTGATGATTTATGGAGAGCTCAAACTAACGATTTAAAGGAATTTAGGCTTTTTGGTTCTGATTCATTTCCCCCCACTCAATCTATTAATGGATTACATAGGGCAAAAACACAATGAAAAGCAATATTGTCTCTCATTTGTATTCTCCCCCTGTGTTTTAACCTTCCACTTCATCCTCCGTGGGCCCATTAACGTCCATGAAAATCATGTTTCTCTGGCTTTGCCTGGTCTCGGGTTAtgggttattgttttttttttttgttttttttttttctgtgggatGTAAATATGCATTGTTATAACCCTTCTGTTAGTTTgctgttgttttcttttgttttcattctgtgcGCAGATTGAAAACAGTTTTGTGAAGACCTGCTCCAAATGCAAAAATGTGGCTCTTCTTTGAGTATAttattgtcagaaaaaaaaatgttttgtaaaaatttTGATGATGAGATCAGAAATAAAGTAATTTAACGATCTAATGTACAGGAGTTTGTCTGTTTGGATGTAATTTGTACTGTGTGAATGCATGATGCACTACATACCTAATGTGTTTTTAAGGATTTTGCTAtattttgcttttcattttgatattataatTGGTTGCATTTGTTGTGTGTTGCAGTATTTCTAAAAACGCTGAAAACCTGATCTGATACCTGATGCTGAGCTTTTTGTAATCTatctggggtgcgtttctgaaaactATCGTTAGCCAtttaaggtcgcaagttccgttgttacaaacatagttcattgatttggtgtttcccaaatccattgttccaCTGAAGatttgcaaactgcatcgcaaacttgtacgcttgcaaccACACCTCTAGAGATGTAGTTAGAACATAGAGTTAGAAGTTTttttcccagttatccccctatgccctattcctttcGAGCGctccaacatttaaacttagaatgatataaaaataaaaaataaaaaaaacataaaagtcaTCGCTCATTGGTgttatttgctttcaaagtattttttacagttcagttttagcaaacTTCATATTAACAATTCTGTACCCTTCACAgcgcactttaaaaacatttctgcCATTTTGAACACATCTGTTCATGACGAAAGgtgtaggtgacctattatttaaaagtgtaatttacttagtctccaaagcttgtgaaaacaaaaatgtatagcaTACACCAATGGTTTAAATTTATAGTTGGTAATTTATTAtgaaatgtatctgtactgtaaatgacatgggcctgttggttggaacatttctgcagtggatGGAA

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0043010 camera-type eye development biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0042551 neuron maturation biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0048880 sensory system development biological_process
GO:0007626 locomotory behavior biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0017075 syntaxin-1 binding molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006029 True 8943 lncRNA 0.34 1 18274014 18282956

Neighbor

gene id symbol gene type direction distance location
XLOC_002696 si:dkey-242g16.2 coding downstream 285235 17987288 ~ 17988779 (-)
XLOC_002695 NA coding downstream 362475 17900311 ~ 17911539 (-)
XLOC_002694 NA coding downstream 528640 17731293 ~ 17745374 (-)
XLOC_002693 stard7 coding downstream 563377 17700016 ~ 17710637 (-)
XLOC_002692 BX927385.1 coding downstream 646761 17627128 ~ 17627253 (-)
XLOC_002698 NA coding upstream 1458 18284414 ~ 18286943 (-)
XLOC_002699 LRRTM4 coding upstream 9015 18291971 ~ 18492617 (-)
XLOC_002700 adra1ab coding upstream 716885 18999841 ~ 19011934 (-)
XLOC_002701 NA coding upstream 806040 19088996 ~ 19092606 (-)
XLOC_002702 si:ch211-127i16.2 coding upstream 1144518 19427474 ~ 19523752 (-)
XLOC_002689 BX927385.3 non-coding downstream 730992 17533610 ~ 17543022 (-)
XLOC_002688 NA non-coding downstream 754980 17509980 ~ 17519034 (-)
XLOC_002703 NA non-coding upstream 1235929 19518885 ~ 19521704 (-)
XLOC_002705 NA non-coding upstream 1648342 19931298 ~ 19996731 (-)
XLOC_002708 CR450836.1 non-coding upstream 1860841 20143797 ~ 20151328 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G422649 NA non-coding CI01000304 null 7603453 ~ 7607680 (+)
tiger barb (Puntius tetrazona) G75081 NA non-coding NC_056708.1 CM032077.1 5657359 ~ 5663075 (+)