XLOC_002701


Basic Information

Item Value
gene id XLOC_002701
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 19088996 ~ 19092606 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006031
TATTTATTcaatatatatgcacatacaatAAACAAAACGCATAACCTGAAGTAACAAATGCAAGTAAAAATTGTTtccaaaaaaactaaactaaaaacaatcattggtttgcaaacaatagaaaaaaatattttctactaAAAAGGGGGACTTTATTTGTACAATCTGAAAAGACTTTGATTAAAAAGCTGGAAGAAAACAATTAATTACATATAGACACTTTTGCAAAGATACTGCATTCACTGAATTCCCCAGTGGCAGAAGCTGCTGAACTGTCAGAATTCTGTAGCATAGTGGAATATTGTAttctgaatgaataataatatttaagaaaATGCATATAAAGTTcataattgcattttattttttaaataatatacacaTTTGAACTATGAAATGTTTGGTTGAACTGTAAACAGTTGAGCTTTGTTAGTTAACATAACTTTGTATTGTCAGACTCGGCAGAGAGCCAGAGCACAGGGCACTGCGATAAGTAATTAACTCCTGTGACTTGCGTTGAACTTAATTGTTCCCTTCCAGTTGCACTTTGAAATAGTATCCATTTATTAGATCCTCAAAAAAAGGACATACATGCACATAATCAACCAATTTAACAAGTTATTTCTCATTAAATGGTTAAAACTTCATAGTCAGACACCACAGctcattatataaaaaaacaagctCGTTTGGAAGAGAATTGCTGAGCCACTTTACAAACCTCTACAACAAAAAGCCTAGACACcattaaaaattgaaaaaataggAAGGAAGCTTCAATATTAAAACTATCCACTAACGGTTTTATTCTTAAAAAGGGTTGATAgtgtgtttacatttgtagtttgGTTCTCTAGCTTCTTTTTGCCCagatcacatatatatatatatatatatatatatatatatatatatatatatatatatagtcaacgTTTGGCATtagtttttgattttgtttttatgttttgttattaaaaaacaaaacaaaatttgttaattctttttattACAGCTTTTTATTGTTTGTTCCTGGTTCACGTTAACATTTTTCAATTTGtccatccaaaaaaataaataaataaaaaaatggcttTTACAAAATTTATTCTGAACCAGAACTTACAGGTAATCCAAAACTGTGCGATGGGCAAAACATGCTCACTTTATGTATCGTACATACATGTGATGATTTTTTAATCAGTTTCTATAAAGagcttataaaatgtgtaaaagaaATACAAGGAGATACGTTTGGGCTACGTTCGCACTgcgaggcttagtgctcaaattagattttttctcagatctgatttttttgcatggctgttcacactgctcttatACATATCtgatttgcagtgtgaacagatcatggtcctaaactgactCGCATGCGCAAAAGTCTGACGTTGTCTAATAATGCTTATATGATTATTGCCCTTTTCACCGACAACCGTGATACATTTTATGAACTGTAAAGGGTTGTTCTTCTACAACTAGTGTGCATTTCAGCATTTAAGTCCTAAAATAAGTCTCCTGTGATaaaaacactgatcatttgtgaATTATGACAACCGCGGTGCGCATCTCTCCAACCAGCGGTGTAGTAAACTCATCAAGGCGGAGTTGGCTTAATTCCGTTGgcagagttatttcattttacttcgttataaacagcagacacgTGCAGAAGGGGGGTTTGGGTGCTCGAGCACCTTCCCTTTTTTTCTCTCGGAGAGAAAGTTCCCCCTCCTTTGCACGTGGATCCCCTATCTGCAACACCCACAACGTTTTCGGCTTCGCAATCAACCCGTCCCTCAATCGTTAACCAGATtagttaacaagcaccagttaTGCCTTCAAAATCTTTTTCAACATGAACAACCAACTCTCTGTGGTAATCGCCCTGTGTGCTATTCTAATGTGCTGCTGAGGGGTACAGTAGATGATGTTtacagcacagaatgatgacgcaaGTCGCTCGaagattatgtaaaagtcacatgaaatctgACATAACAGTTCACACTGCGctcgcattgcaaaacatcagatctgtgtctgatttaagactacatatgaaagtggcacagatctgaccTGAAATTATCAGATTCCATGCAGTTTGGGCTGTTGAGTCACATGAGGGGGGAAAATCTGATTCGGTtcacatttgcctgcagtgtaaACGTAGCCTTGGACAACTTTATTGAACTTTAATGAGCCACATCGTatctataaaagaaaaaagaaacaggtGTGCTTGAGCATTCTGTCATATCTGTGGTCATCCCATGTCCTATTATTGGTGCATTTAGATGCCTTTGGTCCATGGACATTCATTTTTAAGTAGAATTTTAGCAGAGTTCATTTGGAAGTGGGCTGCAAGTACATACACACCAATTTAAACAATGTACACTTACTTTGTACACTAACCAAACCAAaactgccaagtgtgaacacaccagAAAACTTCATATGGTTTGTTTTTCTCCATTTAAATGATAATGTAGAATTTATATGAAGCATTTCATTGGGATTGTAGCATGTATGAGGTAGGAGTGGGTGGGAGGAACCAATGATTGTCAAGAGAATTGAAGTTGCTGCCAATCACTACTTCAATCACAAATTTCCAGTGAAATGTTTGACAAGATTCCCGGAGGCATTTAAATACATCTGCGATTTGCTTGACAAGGTGGCAACAAATTATATATTCCAGTTtcgcaaaataaaatattcttattaCCACCTATAAAAGAGCCTTCATGTGTTTCTAAATTATAATGTGCACTTACTGTCACAATAAGCATTACAATTGAACGCCATTGCAAAAATCAACGCTGAAAGTGCCTCAATGAGACagctttaacatttttatttcacattcagTTTCATCAGCAACAGCGGGGTGCAGAGAGCAATGTCTTGTATTATTTATTCCACCCTTTTATTTGCAACTCCAGCACATAGTGTAAGCTCTTTAGACTTCACTGTAGTTTTCCCCATCCATCAGATAATGTCATTTTCATTAGTTGGGCAGAGGAGTCTGTGTTCTTAGAATCCAGCTTGCTTGAGTGGTCCAGGGACATCAAATGAATAGTGACAGAGTCCCATCTCATCTTGACCATTCAGATGTGTGCTGAGAACCATGCTGTGTTTAGACTAGATTGGAGAATGTGTGAACTGTCAGTAATCAGAAAAGCACAGTATCGGGCTCTGGGTCTGAGAATGAGGTGAAGCTCTTCTGAATATCACGAGTAAGAAGTGATTCTTGCTGACACTGAGAAGGAGGGACACAGGGAACCTCAAATAATGGAACAGATCCCTTTAAACCAGCTGCAGGGTAAAGACCTGGAGTCCAAAAGAAAGAGGAGAAGATGAGTGATACCAGAAAAGGCCAAATGTCTAGAATAATATTACAGTTCTGGTTATTTGAACTGGGCTTCATAATTTAACTAACACGGTCACAGCCCTGAACAAATGTTCTGTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006031 True 3494 lncRNA 0.36 2 19088996 19092606

Neighbor

gene id symbol gene type direction distance location
XLOC_002700 adra1ab coding downstream 77062 18999841 ~ 19011934 (-)
XLOC_002699 LRRTM4 coding downstream 596379 18291971 ~ 18492617 (-)
XLOC_002698 NA coding downstream 802053 18284414 ~ 18286943 (-)
XLOC_002697 NA coding downstream 806040 18274014 ~ 18282956 (-)
XLOC_002696 si:dkey-242g16.2 coding downstream 1100217 17987288 ~ 17988779 (-)
XLOC_002702 si:ch211-127i16.2 coding upstream 334868 19427474 ~ 19523752 (-)
XLOC_002703 NA coding upstream 426279 19518885 ~ 19521704 (-)
XLOC_002704 gfra2b coding upstream 630419 19723025 ~ 19801821 (-)
XLOC_002705 NA coding upstream 838692 19931298 ~ 19996731 (-)
XLOC_002706 NA coding upstream 941294 20033900 ~ 20065149 (-)
XLOC_002695 NA non-coding downstream 1177457 17900311 ~ 17911539 (-)
XLOC_002694 NA non-coding downstream 1343622 17731293 ~ 17745374 (-)
XLOC_002692 BX927385.1 non-coding downstream 1461743 17627128 ~ 17627253 (-)
XLOC_002708 CR450836.1 non-coding upstream 1051191 20143797 ~ 20151328 (-)
XLOC_002710 NA non-coding upstream 1141408 20234014 ~ 20236971 (-)
XLOC_002714 NA non-coding upstream 1356033 20448639 ~ 20456007 (-)

Expression


Co-expression Network