RNA id: TCONS_00006031


Basic Information

Item Value
RNA id TCONS_00006031
length 3494
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_002701
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 19088996 ~ 19092606 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATTTATTcaatatatatgcacatacaatAAACAAAACGCATAACCTGAAGTAACAAATGCAAGTAAAAATTGTTtccaaaaaaactaaactaaaaacaatcattggtttgcaaacaatagaaaaaaatattttctactaAAAAGGGGGACTTTATTTGTACAATCTGAAAAGACTTTGATTAAAAAGCTGGAAGAAAACAATTAATTACATATAGACACTTTTGCAAAGATACTGCATTCACTGAATTCCCCAGTGGCAGAAGCTGCTGAACTGTCAGAATTCTGTAGCATAGTGGAATATTGTAttctgaatgaataataatatttaagaaaATGCATATAAAGTTcataattgcattttattttttaaataatatacacaTTTGAACTATGAAATGTTTGGTTGAACTGTAAACAGTTGAGCTTTGTTAGTTAACATAACTTTGTATTGTCAGACTCGGCAGAGAGCCAGAGCACAGGGCACTGCGATAAGTAATTAACTCCTGTGACTTGCGTTGAACTTAATTGTTCCCTTCCAGTTGCACTTTGAAATAGTATCCATTTATTAGATCCTCAAAAAAAGGACATACATGCACATAATCAACCAATTTAACAAGTTATTTCTCATTAAATGGTTAAAACTTCATAGTCAGACACCACAGctcattatataaaaaaacaagctCGTTTGGAAGAGAATTGCTGAGCCACTTTACAAACCTCTACAACAAAAAGCCTAGACACcattaaaaattgaaaaaataggAAGGAAGCTTCAATATTAAAACTATCCACTAACGGTTTTATTCTTAAAAAGGGTTGATAgtgtgtttacatttgtagtttgGTTCTCTAGCTTCTTTTTGCCCagatcacatatatatatatatatatatatatatatatatatatatatatatatatatagtcaacgTTTGGCATtagtttttgattttgtttttatgttttgttattaaaaaacaaaacaaaatttgttaattctttttattACAGCTTTTTATTGTTTGTTCCTGGTTCACGTTAACATTTTTCAATTTGtccatccaaaaaaataaataaataaaaaaatggcttTTACAAAATTTATTCTGAACCAGAACTTACAGGTAATCCAAAACTGTGCGATGGGCAAAACATGCTCACTTTATGTATCGTACATACATGTGATGATTTTTTAATCAGTTTCTATAAAGagcttataaaatgtgtaaaagaaATACAAGGAGATACGTTTGGGCTACGTTCGCACTgcgaggcttagtgctcaaattagattttttctcagatctgatttttttgcatggctgttcacactgctcttatACATATCtgatttgcagtgtgaacagatcatggtcctaaactgactCGCATGCGCAAAAGTCTGACGTTGTCTAATAATGCTTATATGATTATTGCCCTTTTCACCGACAACCGTGATACATTTTATGAACTGTAAAGGGTTGTTCTTCTACAACTAGTGTGCATTTCAGCATTTAAGTCCTAAAATAAGTCTCCTGTGATaaaaacactgatcatttgtgaATTATGACAACCGCGGTGCGCATCTCTCCAACCAGCGGTGTAGTAAACTCATCAAGGCGGAGTTGGCTTAATTCCGTTGgcagagttatttcattttacttcgttataaacagcagacacgTGCAGAAGGGGGGTTTGGGTGCTCGAGCACCTTCCCTTTTTTTCTCTCGGAGAGAAAGTTCCCCCTCCTTTGCACGTGGATCCCCTATCTGCAACACCCACAACGTTTTCGGCTTCGCAATCAACCCGTCCCTCAATCGTTAACCAGATtagttaacaagcaccagttaTGCCTTCAAAATCTTTTTCAACATGAACAACCAACTCTCTGTGGTAATCGCCCTGTGTGCTATTCTAATGTGCTGCTGAGGGGTACAGTAGATGATGTTtacagcacagaatgatgacgcaaGTCGCTCGaagattatgtaaaagtcacatgaaatctgACATAACAGTTCACACTGCGctcgcattgcaaaacatcagatctgtgtctgatttaagactacatatgaaagtggcacagatctgaccTGAAATTATCAGATTCCATGCAGTTTGGGCTGTTGAGTCACATGAGGGGGGAAAATCTGATTCGGTtcacatttgcctgcagtgtaaACGTAGCCTTGGACAACTTTATTGAACTTTAATGAGCCACATCGTatctataaaagaaaaaagaaacaggtGTGCTTGAGCATTCTGTCATATCTGTGGTCATCCCATGTCCTATTATTGGTGCATTTAGATGCCTTTGGTCCATGGACATTCATTTTTAAGTAGAATTTTAGCAGAGTTCATTTGGAAGTGGGCTGCAAGTACATACACACCAATTTAAACAATGTACACTTACTTTGTACACTAACCAAACCAAaactgccaagtgtgaacacaccagAAAACTTCATATGGTTTGTTTTTCTCCATTTAAATGATAATGTAGAATTTATATGAAGCATTTCATTGGGATTGTAGCATGTATGAGGTAGGAGTGGGTGGGAGGAACCAATGATTGTCAAGAGAATTGAAGTTGCTGCCAATCACTACTTCAATCACAAATTTCCAGTGAAATGTTTGACAAGATTCCCGGAGGCATTTAAATACATCTGCGATTTGCTTGACAAGGTGGCAACAAATTATATATTCCAGTTtcgcaaaataaaatattcttattaCCACCTATAAAAGAGCCTTCATGTGTTTCTAAATTATAATGTGCACTTACTGTCACAATAAGCATTACAATTGAACGCCATTGCAAAAATCAACGCTGAAAGTGCCTCAATGAGACagctttaacatttttatttcacattcagTTTCATCAGCAACAGCGGGGTGCAGAGAGCAATGTCTTGTATTATTTATTCCACCCTTTTATTTGCAACTCCAGCACATAGTGTAAGCTCTTTAGACTTCACTGTAGTTTTCCCCATCCATCAGATAATGTCATTTTCATTAGTTGGGCAGAGGAGTCTGTGTTCTTAGAATCCAGCTTGCTTGAGTGGTCCAGGGACATCAAATGAATAGTGACAGAGTCCCATCTCATCTTGACCATTCAGATGTGTGCTGAGAACCATGCTGTGTTTAGACTAGATTGGAGAATGTGTGAACTGTCAGTAATCAGAAAAGCACAGTATCGGGCTCTGGGTCTGAGAATGAGGTGAAGCTCTTCTGAATATCACGAGTAAGAAGTGATTCTTGCTGACACTGAGAAGGAGGGACACAGGGAACCTCAAATAATGGAACAGATCCCTTTAAACCAGCTGCAGGGTAAAGACCTGGAGTCCAAAAGAAAGAGGAGAAGATGAGTGATACCAGAAAAGGCCAAATGTCTAGAATAATATTACAGTTCTGGTTATTTGAACTGGGCTTCATAATTTAACTAACACGGTCACAGCCCTGAACAAATGTTCTGTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006030 lncRNA downstream 802053 18284414 ~ 18286943 (-) True XLOC_002698
TCONS_00006029 lncRNA downstream 806040 18274014 ~ 18282956 (-) True XLOC_002697
TCONS_00005014 lncRNA downstream 1100247 17988134 ~ 17988749 (-) True XLOC_002696
TCONS_00006028 lncRNA downstream 1177457 17900311 ~ 17911539 (-) True XLOC_002695
TCONS_00005007 lncRNA downstream 1343652 17731431 ~ 17745344 (-) False XLOC_002694
TCONS_00005758 lncRNA upstream 426279 19518885 ~ 19521704 (-) True XLOC_002703
TCONS_00006032 lncRNA upstream 838692 19931298 ~ 19996731 (-) True XLOC_002705
TCONS_00005030 lncRNA upstream 1011009 20103615 ~ 20106012 (-) True XLOC_002707
TCONS_00005031 lncRNA upstream 1051191 20143797 ~ 20151328 (-) True XLOC_002708
TCONS_00006033 lncRNA upstream 1141408 20234014 ~ 20236971 (-) True XLOC_002710
TCONS_00005021 mRNA downstream 77062 18999841 ~ 19011934 (-) False XLOC_002700
TCONS_00005022 mRNA downstream 82417 18999855 ~ 19006579 (-) True XLOC_002700
TCONS_00005017 mRNA downstream 596379 18291971 ~ 18492617 (-) False XLOC_002699
TCONS_00005016 mRNA downstream 596379 18291971 ~ 18492617 (-) False XLOC_002699
TCONS_00005018 mRNA downstream 596379 18433634 ~ 18492617 (-) False XLOC_002699
TCONS_00005023 mRNA upstream 334868 19427474 ~ 19523752 (-) False XLOC_002702
TCONS_00005024 mRNA upstream 338797 19431403 ~ 19497914 (-) True XLOC_002702
TCONS_00005025 mRNA upstream 630419 19723025 ~ 19801651 (-) False XLOC_002704
TCONS_00005026 mRNA upstream 705870 19798476 ~ 19801821 (-) True XLOC_002704
TCONS_00005027 mRNA upstream 941294 20033900 ~ 20065149 (-) True XLOC_002706
TCONS_00005004 other downstream 1461743 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005003 other downstream 1518844 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 1545974 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 1569962 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004997 other downstream 1587592 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00005042 other upstream 1391208 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005057 other upstream 1567811 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 1815836 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 1948051 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005070 other upstream 2451295 21543901 ~ 21544517 (-) True XLOC_002729

Expression Profile

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