RNA id: TCONS_00006033


Basic Information

Item Value
RNA id TCONS_00006033
length 2719
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_002710
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20234014 ~ 20236971 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAAACCTGAAATTTTGCTTATTGAAAATATGTAATTGAAAGATACAGCATTTTAGTGTTAATTGAGTTACAGTTTAACAACACTGAATTCCAGTGAATTCTTTATCTCATGTGATACAATCTCAGGCTCGCTAGGCATGCGCTTGTATGTGTGGGCCGTGTTCAGACAGGTAACAATACACTAGCTGTCCTTCAAGCACAGAATGTTCAAAATGTGTGCGTCGTAATCAGAGAAAACCTTGACAAGCACAGACTTGGATTAAGAGGAGAAAATGACAAAGCCGGTCTTACAAAACACTAGTGTGCCATCCATCAGCCACTCAAACCGTAAAAGCAGCGGCAATATAGAGGGAGAAGAATCTGGAAACAATCCAATTTCCAAAAAAACACAATTCAAGACAGGAAAATAAAGAAACGACAccagttttttttccccaacattttttgtatttcattttactttcgtttttctttttttaaatggagCGATACATCAACATAAATCAAGATTTATAGAGGCCTCGCAATACAAGTACTTGACACAAACTCCTCCGCCGTCCTCTTTTATTAGCTATtaagaaagaaacaaaacaaaaaaatgaaatcaaaatgtctAAACATTGTGTAGATTCTGCAAGATATGTTTGGAATTCGTAACAGAAGCCCTCCTAAATAGGGGTCGGTGGTCGGAACGACCCCCAATTCCTCTCCAATATCAAACAAAAACCTCCCTTCCCGACCCAAAACCCACACCAGACATCCGCTTTTAAATTAAACATGAaggaaactaaacaaaacaatagtTTGCTGAGGCTCATTACATAAAACAAAGACTTGAAAAGACAAACACTTAAAAAGAGGACACGAAAAGGTGGTCATGGGGTCAACTTTTGGTACCTGTTTAAGGGTTTTAGGCCTCTCTCAGGTTGTTGTTTTATATCGCAAACAGTAAAGCGTTAAATTAACCGAggcgttttttttcttttcgttaaAGAGTGTCTACACGACTACGCCGATTGAGCGCTCGCCTCTTCTCAAGTGAATGGAGAGGCAACGATCAAATACAATcagcaggtttttttttgttgtttttgttttttaaatgataaagccatatattacattaaaacactgattttcttttctttggatgAGAGAGTtacttttaaatacattaatgatAACATGCAGGTTTTCCCCTCGCAGAGTCTCGTTTTAAGATGTGCACCACGAAAAATGGAGTTTAGCGCAAGCAAGTCCTGAACCGCTTGCGGCGTTAAATAAAACGAAAAAAATACATGCGAGCGACAGTCTCGATGCCTGCGCGCAGGACTCTTGCTATAGTTATTAGCATGGCACATGACCTCAAACGTGTAACGTACAGGACGTCAGAGTCTTAGCGCAGCGAAATCTTCAGCCGCCGAATTTTACGCAATGATAACAGTACAGTTTAGAAAacgaaaaagcaaaacaaaagatCTGAAAAGACGATTTGGTAAACAGTTCTTGCAAATTCTGTTCCTCTCAAAACACACAGCACAGTAAAAGCATTCAAAAGAACGTTGCTTTGCTTCAGGTAAAAGCAAAGATGAGGCTTTAGTCAATCATATGCGTGGAAAATGGTCCACTCTAGAGAATACAGGCGCAGCTATAGAAATACTAGCGCTGAAGATACTTACAAGTGTGTTGATAGGTACAAAATAAGATCTAATTAAATgagttttaatgtttaaaacagCCAACTTGTGGGCTAGAACTGTTTTGTAGAAAGGGAAAATAAAAAAGGCAAGAAAAAGTAAATTCAGATTAACAAGTTTCATTTATATTGAGATCTAAGGCATGTATGCGCATGTTCTGAAATGTATAACCTCACCCTCGCTATTTAACGCACATTTTATGGGATTTATTTGACTGCTAAAGCAGTTAGGCAAAAAAAACAAAGTGTAAAATCATGCCTTTAACAGCTGTAGTACTGGTGAAACGTCTAAAAGTGAGCGGAATTAGGCCACAAAAGCGTGACAAGAAAATGGagggaaaaagtaaacaaaaaacatgCAGACACAATTGCTCCTCCTACCATCCTTCCTGATTTTTTTTGGGATGGTTTATGCTTTTACCGCCGTTTGATTACGAATGGGTGCAGTTTGAGTTATGAAcaggaaaaagaaaacaaataaaaactaagtaAACATCACGTTTGGTTGAGGGAACACTTGAAAATGTACACGTATGTATAAATGTGTCAACACTTGTTATTAATGCACTCCCCTTAGCTATAATTGGCATTATGAAGATATTTTCCCACATATGGTTTCAATAACAaaacttcttttttgtttaatttgcttTAACAATTATCATACTTGCTTTGGGTATTCACAAATATAATGattacataattaaaacattCGATATAATTATATCGGGCCAAGAATTCATTTGCCGAGAGCACAAACAATGATAAAGCAAGTcttggttgtaaaaaaaaaaaaaaaaaaaaaaaaagaaacgaaaaaaaggcagaaataaatctaatttataaatgcaaatttacaaaatggattgtatttttttttgtttgtttttctttttaaactacAGAATCTAAGATGACCTTACAACCACCCCAATgctatgtctatatatatatattctgtatttTATGTACACagagagaagaaaataaaacaaaaataaaaaaacaaaagagacaGAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005031 lncRNA downstream 82686 20143797 ~ 20151328 (-) True XLOC_002708
TCONS_00005030 lncRNA downstream 128002 20103615 ~ 20106012 (-) True XLOC_002707
TCONS_00006032 lncRNA downstream 237283 19931298 ~ 19996731 (-) True XLOC_002705
TCONS_00005758 lncRNA downstream 712310 19518885 ~ 19521704 (-) True XLOC_002703
TCONS_00006031 lncRNA downstream 1141408 19088996 ~ 19092606 (-) True XLOC_002701
TCONS_00005037 lncRNA upstream 211668 20448639 ~ 20456007 (-) False XLOC_002714
TCONS_00005039 lncRNA upstream 215161 20452132 ~ 20453993 (-) True XLOC_002714
TCONS_00006034 lncRNA upstream 379805 20616776 ~ 20618813 (-) True XLOC_002720
TCONS_00005059 lncRNA upstream 605947 20842918 ~ 20888760 (-) True XLOC_002724
TCONS_00005071 lncRNA upstream 1333225 21570196 ~ 21572296 (-) False XLOC_002730
TCONS_00005032 mRNA downstream 58896 20158838 ~ 20175118 (-) True XLOC_002709
TCONS_00005028 mRNA downstream 128002 20103067 ~ 20106012 (-) False XLOC_002707
TCONS_00005029 mRNA downstream 128461 20103585 ~ 20105553 (-) False XLOC_002707
TCONS_00005027 mRNA downstream 168865 20033900 ~ 20065149 (-) True XLOC_002706
TCONS_00005026 mRNA downstream 432193 19798476 ~ 19801821 (-) True XLOC_002704
TCONS_00005033 mRNA upstream 33860 20270831 ~ 20339113 (-) False XLOC_002711
TCONS_00005034 mRNA upstream 49801 20286772 ~ 20339138 (-) True XLOC_002711
TCONS_00005035 mRNA upstream 114442 20351413 ~ 20357013 (-) True XLOC_002712
TCONS_00005036 mRNA upstream 170917 20407888 ~ 20445549 (-) True XLOC_002713
TCONS_00005038 mRNA upstream 211669 20448640 ~ 20453995 (-) False XLOC_002714
TCONS_00005004 other downstream 2606761 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005003 other downstream 2663862 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 2690992 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 2714980 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004997 other downstream 2732610 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00005042 other upstream 246843 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005057 other upstream 423446 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 671471 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 803686 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005070 other upstream 1306930 21543901 ~ 21544517 (-) True XLOC_002729

Expression Profile

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