RNA id: TCONS_00004998


Basic Information

Item Value
RNA id TCONS_00004998
length 767
RNA type unprocessed_pseudogene
GC content 0.44
exon number 7
gene id XLOC_002688
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17509980 ~ 17519034 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTTGTGAACCGGAGTCTGACGCTTGAAAACATCAAGTGCTATGGCTTCGACATGGATTACACTCTGGCAGTTTATAAATCTCCAGAGTATGAGAGTCTGGGCTTTGAGCTGCTCAGGGACAGGCTTGTGTCCATTGGATATCCGCACGAGCTTCTGGGATATACATACGACTCTACTTTCCCACACGAGGTCTGGTCTATGACACCACATACGGTAACCTGTTGAAAATAGACTCCAATGGAAACATTCTGGTCTGCACTCACGGCTTCTAGTACCTGAGAGGGTGAtagggctggacaataattgtGACGCATTTACACATTCAACTGATGGATGATCATTCTGTCAACATGTATTTGTTCTGATTCTTTTCTCAGAGACCTATCTTTATGCCTGCCTGGTTGACTTCTACACCAAAAGCACCAGATACAAGAAGTAGACATGTTCTGACAGAgatgtttatttgttattattcaaGAGTTCATAACTCCATGAGGCACAGGCTCACTACAGTGTTGTTGTTATTCAGGAGACACTGAAGGAACGGACTCTGAAAAACCAGGACAAGTACGTCATTAAAGATCCTCGTATTCCTGTGTTACTGAGCCGCATCAAAGAGGTCGCTAAAGTGTTCCTGGCCACCAACAGCGACTTCAATTACACCGAGGCTATCATGAAATACTTACTGGATGCGGCAACAGCATCTAGTCGTGGTGCTCTTACTTTGACCTGGTGGTTGTGGATAACcatataaccattgacttc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000132558

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004994 lncRNA downstream 46563 17460789 ~ 17463417 (-) False XLOC_002686
TCONS_00006025 lncRNA downstream 67559 17437490 ~ 17442421 (-) False XLOC_002685
TCONS_00006024 lncRNA downstream 67559 17437490 ~ 17442421 (-) True XLOC_002685
TCONS_00006023 lncRNA downstream 67998 17437490 ~ 17441982 (-) False XLOC_002685
TCONS_00006022 lncRNA downstream 69314 17437490 ~ 17440666 (-) False XLOC_002685
TCONS_00006027 lncRNA upstream 63058 17582092 ~ 17587901 (-) True XLOC_002691
TCONS_00005011 lncRNA upstream 212259 17731293 ~ 17745344 (-) False XLOC_002694
TCONS_00005008 lncRNA upstream 212259 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00005006 lncRNA upstream 212259 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00005007 lncRNA upstream 212397 17731431 ~ 17745344 (-) False XLOC_002694
TCONS_00004996 mRNA downstream 8452 17485945 ~ 17501528 (-) False XLOC_002687
TCONS_00004993 mRNA downstream 25216 17460361 ~ 17484764 (-) False XLOC_002686
TCONS_00004992 mRNA downstream 25218 17460358 ~ 17484762 (-) False XLOC_002686
TCONS_00004995 mRNA downstream 42990 17462543 ~ 17466990 (-) True XLOC_002686
TCONS_00004990 mRNA downstream 225925 17254502 ~ 17284055 (-) True XLOC_002683
TCONS_00005000 mRNA upstream 24242 17543276 ~ 17550239 (-) False XLOC_002690
TCONS_00005001 mRNA upstream 24646 17543680 ~ 17550931 (-) True XLOC_002690
TCONS_00005002 mRNA upstream 33699 17552733 ~ 17587832 (-) False XLOC_002691
TCONS_00005005 mRNA upstream 180982 17700016 ~ 17710637 (-) True XLOC_002693
TCONS_00005009 mRNA upstream 212398 17731432 ~ 17745374 (-) False XLOC_002694
TCONS_00004997 other downstream 8576 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00004991 other downstream 167499 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004980 other downstream 353305 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004978 other downstream 377070 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004975 other downstream 426603 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004999 other upstream 14576 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00005003 other upstream 43941 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00005004 other upstream 108094 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005042 other upstream 2964780 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005057 other upstream 3141383 20660417 ~ 20696513 (-) False XLOC_002723

Expression Profile

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