RNA id: TCONS_00004992


Basic Information

Item Value
RNA id TCONS_00004992
length 2218
RNA type mRNA
GC content 0.46
exon number 18
gene id XLOC_002686
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17460358 ~ 17484764 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCGCGGCAGCTAGTTCGCGTGCTCACCACATACGCCCAAACTACGTACACAGGGCTCCTGTTTACCAGCCAAACCCCAGGAAAATTCACTCTGGTGATGTCAACAACATGGCACAATTTAAAGCGCAAAGTGGAGTTTCGTGACCACTTTAGATTGTGTTGATATTTGGGCAGCGGGAGCGAGCGGACGCACCGGGCACACGCGATGGAGCCGCGCATCAACAAAAAAGAGCTCCAGCACAGGGTGTTTGTGAACCGGAGTCTGACGCTTGAAAACATCAAGTGCTATGGCTTCGACATGGATTACACTCTGGCAGTTTATAAATCTCCAGAGTATGAGAGTCTGGGCTTTGAGCTGCTCAGGGACAGGCTTGTGTCCATTGGATATCCGCACGAGCTTCTGGGATATACATACGACTCTACTTTCCCCACACGAGGTCTGGTCTATGACACCACATACGGTAACCTGTTGAAAATAGACTCCAATGGAAACATTCTGGTCTGCACTCACGGCTTCGAGTACCTGAGAGGtgaaCAGGTGGATGAGTATTATCCAAACAAGTTCATCCAGAGAGACGACACTGACCGATTTTACGTCCTCAATACACTCTTCAACCTCTCAGAGACCTATCTTTACGCCTGCCTGGTTGACTTCTACACCAAAAGCACCAGATACAAGAATTGGCCGAAGGGGTTCAAACATGGTGACTTGTTCATGTCACACAGAAGCATGTTTCAGGACGGGACACTGAAGGAACGGACTCTGAAAAACCTGGACAAGTACGTCATTAAAGATCCTCGTATTCCTGTGTTACTGAGCCGCATCAAAGAGGTCGCTAAAGTGTTCCTGGCCACCAACAGCGACTTCAATTACACCGAGGCTATCATGAAATACTTACTGGATGCGGCGACAAGCTCTAAGGGCATGAAAAAGTCATGGCGCTCTTACTTTGACCTGGTGGTTGTGGATACGAGGAAGCCCTTGTTCTTCGCTGGAGGGACAGTTTTACGCCAAGTGGACACAGACACTGGGAAGTTGCGTATCGGCACGTACACCGGAGACCTCCAGCATGGGACGGTGTATTCTGGAGGATCTTCTGATCTAGTCTGTGACTTGCTGGATGTGAAGGGCAAAGACATCCTCTATGTGGGCGATCACATTTTTGGGGACATCCTGAAGTCCAAGAAGCGACAGGGCTGGAAGACGTTCCTTGTGGTTCCTGAGCTTGTGAAGGAACTGCATGTGTGGGCAGACAAATCCAGTATGTTTGAGGAGCTGAAACACCTCGACATCTTCCTTGCAGAGTTGTATCAGCATTTGGACAGTGGAAGTCAAGAGTGTCCAGATATCAGTGCGATCCAGACCAGGATAAAGATGGTGACGTACGGCATGGATCTGTGTTATGGGAAGATGGGCAGTTTGTTGCGCTGTGGCTCTACTAAAACACTGTTCGCCAGTCAGTTACTGCGGTATGCAGACATTTACTCAACCACCTGCCTTAACCTGCTTAACTACCCCTTCAGCTTCCTCTTCAGAGCCCCGCTCGTCCTGTTGCCACATGAGGCCGCTGTGGAGACTCAGAATAAAGAGCAGATGGCAGAGCTGTCAGAGCACATGCGCAGAACCAGCCTCAAGCAGCGTCAGTGTGAGTGTGAGGATGGAGATTGTGGACAAGATGACAACTGTGCCGCCAGAAACAGCGCTTCCACTTCAACTTCAGACAAATAGACATTTTCAGTTTGTTTACTGCTGTAAATAggcctatgatttttttttaacttgcataTGTTTTACCTTCACACGTTTCCATTGCTGTGTGTTGCTGTTCCATAGTTCCGCTCGGATATGTTTCCACTTCCGGCAGAAAGTAAACGGAATTAATTTGCCAAGTTTGCGATGTCTTATTGAGTTAACAGCTGTTATTTGTAAAGCAGGTATAAATCAGTATTTAAGCATTTTGTAAAACTTTTGTATTCTGTAGATTTAAATATGATATTCAGCCTTTTGTATGACAGTCACCATTAATGCATGAAAACTGGACAAGAACAATCTGATTTTGAAGTTTCATTAGAAAAGTTCGTTTATATCTCTATTTAACTATTTACATCAATACAGGGGTTGACATGAAGACTATAAAATGTTTCTACTCCTGTGAATGCTTTGTTTACtatttttcataatattatcGAAATTACgattaaagtgtttattttaga

Function

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0046872 metal ion binding molecular_function
GO:0008253 5'-nucleotidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031006-8 Predicted to enable 5'-nucleotidase activity. Acts upstream of or within cellular response to xenobiotic stimulus. Is expressed in blood; eye; tail bud; ventral mesoderm; and yolk syncytial layer. Orthologous to human NT5DC4 (5'-nucleotidase domain containing 4).

Ensembl:

ensembl_id ENSDART00000137905

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006025 lncRNA downstream 17937 17437490 ~ 17442421 (-) False XLOC_002685
TCONS_00006024 lncRNA downstream 17937 17437490 ~ 17442421 (-) True XLOC_002685
TCONS_00006023 lncRNA downstream 18376 17437490 ~ 17441982 (-) False XLOC_002685
TCONS_00006022 lncRNA downstream 19692 17437490 ~ 17440666 (-) False XLOC_002685
TCONS_00004986 lncRNA downstream 280211 17179372 ~ 17180147 (-) False XLOC_002681
TCONS_00006026 lncRNA upstream 25218 17509980 ~ 17511199 (-) False XLOC_002688
TCONS_00006027 lncRNA upstream 97330 17582092 ~ 17587901 (-) True XLOC_002691
TCONS_00005011 lncRNA upstream 246531 17731293 ~ 17745344 (-) False XLOC_002694
TCONS_00005008 lncRNA upstream 246531 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00005006 lncRNA upstream 246531 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00004990 mRNA downstream 176303 17254502 ~ 17284055 (-) True XLOC_002683
TCONS_00004988 mRNA downstream 227986 17223681 ~ 17232372 (-) False XLOC_002682
TCONS_00004989 mRNA downstream 228441 17223985 ~ 17231917 (-) True XLOC_002682
TCONS_00004982 mRNA downstream 238275 17171604 ~ 17222083 (-) False XLOC_002681
TCONS_00004996 mRNA upstream 1183 17485945 ~ 17501528 (-) False XLOC_002687
TCONS_00005000 mRNA upstream 58514 17543276 ~ 17550239 (-) False XLOC_002690
TCONS_00005001 mRNA upstream 58918 17543680 ~ 17550931 (-) True XLOC_002690
TCONS_00005002 mRNA upstream 67971 17552733 ~ 17587832 (-) False XLOC_002691
TCONS_00005005 mRNA upstream 215254 17700016 ~ 17710637 (-) True XLOC_002693
TCONS_00004991 other downstream 117877 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004980 other downstream 303683 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004978 other downstream 327448 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004975 other downstream 376981 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004954 other downstream 1841343 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004997 other upstream 8719 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00004998 other upstream 25218 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004999 other upstream 48848 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00005003 other upstream 78213 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00005004 other upstream 142366 17627128 ~ 17627253 (-) True XLOC_002692

Expression Profile

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