XLOC_002691 (smarcad1b)


Basic Information

Item Value
gene id XLOC_002691
gene name smarcad1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17552733 ~ 17587901 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005002
CGTACAAACAACAAAAGCGGTGAAATATCTCAGACACACGTCACGCAGACTAATGGCCGGAGTTAACCAGGTTTATCTGTTCATTAGCGGCGGCCGAAACCGACTAGAGGCTGATTATTGACAAAGCGATCATTTATTAGCTCGCCGGTGAACTCTTTGTTATAGTCAGCTGCTTTTATGGTCCCCAAATCAGCTGAAAGCGGGTTGTAGATGGTGGATTCGGGCAGCGACGCGTCAGATGTGGCTCAGTGTATCGATTGAGATGCGTGACATTATGCGCGAAAGTGGATTGAGCTGTTTTTCTAACGCGTCGAGTGAACAATGAGGAGAAAGAAAGGACCAGCATCATCCTCAGATCATGAGGAGCCCCCGGAGTCAGACAGTGTCATTCCAGAGACGCCGGAAACCAAACGTCCATCGGGATCATCTCTGTCCACCGCCATTTCTGACTCGGACTCGGACTCTGATAGTGAGATTTCAGGCAGCTCCATGATGCCTGTCAGGAAACTTAGGCCTAGGAAGAGAAAAGCAGCATCATCTGCGGATGAGTACTCAGTGTCTGACGAAGAGGAAGAGATTGTGGTGAAGACTAAACGAAGGCCGACGCACAGCAGAACGACAAGATCTACCTCACAGCAAGCTCAACCAGCACACCAGAAGGCCTCAGAGACGGTGACCGACATCGCACACCCCTCGCCCCTGAAGACATCCGGGATGGCAGCTGCTGATTCGGTCCAGCAAAGGAGGCGACAGCAGATGTGCGGCTCTTCCCAGGAGAGCGACAGCAGAAAGGGTGGACGGGTTTCTGCGGCTGATGATTCAGAGGAGGAGGGACAGAGATCTAAAGATCAGGAACGTATGCTGAGAAAACTCCAAAGGAAGTTCCCACATCTCAACAAGAATGAACTCAGGGATGTGCTTCAGGAGCACGACTGGCTTATTGACGATGCCTTGGAAACACTACGAATGTTCTCTGACCTCGTGGTTGAGTCTGAAGATGACAGCTCTCAAACTTCCACTCCTGCCAAACACACCAGACGGGTTGCAGAGACCCGCCCACAAGCTCAGGTTACCAAACTTTCCAGCCCACCCAAACCAAAACCCAGCAGACCTCTGGACGGGACCAGAACATCGCAGAGGATCGCAAAGCAGCCCATATTGGCCAAATACACATATGTGAGCTCAGAAGAGGAGTGCAGTGACTCTGAGGCCTCTGTAGTCAACGGTTTACTGGACTCTgactctgaccaatcagaggagacCCTATCCAAGCTCAAAACTGAGATTCTCTGCTTCTTTCAGTCCGCGTCTGTGGATGAGCTCACACTCATTGCAGGATGCTCTTTGAAGAAGGCGCAGAAAATCACTGAGCTGAGACCCTTTAAAACGTGGAAAGACCTGGATGATGCCATGCGCAGAAGAAACGGTCTGTCCGCTGAGCTCCTGGCAGGATGTCGAGAGGTTCTGAAGGAGAGGGAAGTTGTTAAAGGTCTCATGAGCAAGTGTGAGGAGATTTCAGTCAAACTGATCCAAGACGTGACGCAAGTAATGGACAAGGGCCCGGGCTCCATGACCCAGCCCGAGATCCTCTCTAGCACATTCCAGTTGAAACCGTACCAGCTGATTGGCCTGAATTGGCTGGTTTTGCTTCATCAGAACAAACTCAGTGGAATCCTGGCAGATGAGATGggttTGGGAAAGACCATCCAGGCCATTTCGTTCCTGGCTCACCTCTATCAGGAAGGGAACCATGGGCCTCATCTGATCACTGTACCTGCTTCTACACTTGATAATTGGGTGCGGGAACTGAATCTATGGTGCCCCAGCTTTAAAGTGCTGGTATATTATGGCTCTGCTGATGATCGCAAGTACATGCGCTATGAAATCCTCAATCAAATAGTGGAGTACAACATCATCGTGTCCACTTACAACCTGGCCATTGGAAACAGCAGTGACCGCAGCCTGTTCTGCAAGCTCAAGCTGGAGTATGCAGTGTTTGACGAAGGCCACTTGCTGAAGAACATGAACTCGCTGCGCTACCGACACCTCATGGCCATCAATGCTAAATATCGTCTGCTGCTCACTGGAACCCCACTGCAGAACAACCTGCTGGAGCTCATGTCCCTGCTGAacttcatcatgcccaacatgttCTCCAGCAGCACTTCACAGATCGCCAAGATGTTCTCCATGAAATCGTCAGAGGAGCAGAGCAGCTTTGAGCGGGACAGGATCACCCATGCCAAGCTCATCATGAAACCCTTCATCCTCAGACGTGTGAAGAGCGAGGTCCTGAAGCAGCTGCCTGCCAAAGAGGAGCAGGTTGAATTTTGTGCCATGTCCGAGAGGCAGCAAGAACTCTACAGCGCCCTTCTCCACAAGCTGAAGCATTCTAGTAATGGGGAAAAACGCGAGCTGACCAATGTGATGATGCAGCTGAGGAAGATGTCCAACCATCCGCTTCTTCACCGGCAGTTTTACACCACAGAAAAACTCAAAGCCATGAGCAAACTCATGCTCAAGGAGCCGAGTCACCGTGATGCAGATCCCGCTCTCATCAAAGAGGATATGGAAGTGCTCTCAGACTTTGAGTTACACCGCCTCTGTCAGCAGTATTCAGCACTGCACGAATACCAGCTCAACACAGACGTACTGCTGGACTCGGGCAAGCTCAGCCTCCTCACACAGCTGCTGAACTCCCTGAAGGAAAAGGGTGACCGAGTGGTGCTGTTTAGCCAGTTCACAATGATGCTTGACATTCTGGAAGTGTTTCTTAGACACCATAAGCACAGATACAACCGACTGGATGGTTCAACCCCCATGAGTGACAgAATTGGGCTGATTGACCAGTTCAACACAGACCAGGATATATTTGTGTTCCTGCTGTCCACCAGAGCCGGAGGGCTGGGCATTAACTTGACTTCAGCCAATGTGGTCATCCTTCACGATATCGACTGCAACCCTTACAATGACAAACAGGCAGAGGGCCGCTGTCACCGGGTCGGACAAACCAAGACCGTGAAGGTGATCAAGCTGATAAGTAAGGACTCCATAGAGGACACCATGCTTCGAATTGGAGAAAGAAAACTCAAACTAGAGCAGGAAATGACCGCAACTCAGGACGGCGAAGAAGACACATTACCTGATGATATGACCACGCTGCTCAAAGCTTCTCTCGGGCTCTGAAAGTTGGTCCAGGAGTAAAGCTTGTTGTGATACTATGACTGAATCTGAAAGAAAAAGTACTGTAGCACAATAAAATCTGGTTTTCCTACACCACCTGCAGAAATATGCGATTCAAATGAGCTGATTTGTTTACATTTCTACTGTTCATTGCAAAAGATGATGTAATATTGTATGTGTGTTGATGGTGCTTGTATTTGTGAAGGTTTAAATCTGCAGTTGTTTGGTTAAAAAAGTCTGTTTTTCAAAGATATTTGGGGgggggattaaaatatttgttt
>TCONS_00005003
ATAATTGGGTGCGGGAACTGAATCTATGGTGCCCCAGCTTTAAAGTGCTGGTATATTATGGCTCTGCTGATGATCGCAAGTACATGCGCTATGAAATCCTCAATCAAATAGTGGAGTACAACATCATCGTGTCCACGCTAAATATCGTCTGCTGCTCACTGGAACCCCACTGCAGAACAACCTGCTGGAGCTCATGTCCCTGCTGAacttcatcatgcccaacatgttCTCCAGCAGCACTTCACAGATCGCCAAGATGTTCTCCATGAAATCGTCAGAGGAGCAGAGCAGCTTTGAGCGGGACAGGATCACCCATGCCAAGCTCATCATGAAACCCTTCATCCTCAGACGTGTGAAGAGCGAGGTCCTGAAGCAGCTGCCTGCCAAAGAGGAGCAGGTTGAATTTTGTGCCATGTCCGAGAGGCAGCAAGAACTCTACAGCGCCCTTCTCCACAAGCTGAAGCATTCTAGTAATGGGGAAAAACGCGAGCTGACCAATGTGATGATGCAGCTGAGGAAGATGTCCAACCATCCGCTTCTTCACCGGCAGTTTTACACCACAGAAAAACTCAAAGCCATGAGCAAACTCATGCTCAAG
>TCONS_00006027
CGGCCACCGTAGTTACAGATGTTACAACCGGTTAGCGTTTGATCAGAACTGTCTTCATTCATTAAATACCGTACAAACAACAAAAGCGGTGAAATATCTCAGACACACGTCACGCAGACTAATGGCCGGAGTTAACCAGGTTTATCTGTTCATTAGCGGCGGCCGAAACCGACTAGAGGCTGATTATTGACAAAGCGATCATTTATTAGCTCGCCGGTGAACTCTTTGTTATAGTCAGCTGCTTTTATGGTCCCCAAATCAGCTGAAAGCGGGTTGTAGATGGTGGATTCGGGCAGCGACGCGTCAGATGTGGCTCAGTGTATCGATTGAGATGCGTGACATTATGCGCGAAAGTGGATTGAGCTGTTTTTCTAACGCGTCGAGTGAACAATGAGGAGAAAGAAAGGACCAGCATCATCCTCAGATCATGAGGAGCCCCCGGAGTCAGACAGTGTCATTCCAGAGACGCCGGAAACCAAACGTCCATCGGGATCATCTCTGTCCACCGCCATTTCTGACTCGGACTCGGACTCTGATAGTGAGATTTCAGGCAGCTCCATGATGCCTGTCAGGAGCATTTCATCCATGCtcccatgacaa

Function

symbol description
smarcad1b Predicted to enable ATPase, acting on DNA; DNA binding activity; and chromatin binding activity. Predicted to be involved in ATP-dependent chromatin remodeling and DNA double-strand break processing. Predicted to act upstream of or within DNA repair and chromatin organization. Predicted to be located in site of double-strand break. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in BASAN syndrome and adermatoglyphia. Orthologous to human SMARCAD1 (SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0000729 DNA double-strand break processing biological_process
GO:0006281 DNA repair biological_process
GO:0035861 site of double-strand break cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0003682 chromatin binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091113-61 Predicted to enable ATPase, acting on DNA; DNA binding activity; and chromatin binding activity. Predicted to be involved in ATP-dependent chromatin remodeling and DNA double-strand break processing. Predicted to act upstream of or within DNA repair and chromatin organization. Predicted to be located in site of double-strand break. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in BASAN syndrome and adermatoglyphia. Orthologous to human SMARCAD1 (SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1).

Ensembl:

ensembl_id ENSDARG00000073721

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005002 False 3464 mRNA 0.49 23 17552733 17587832
TCONS_00005003 False 598 processed_transcript 0.49 6 17562975 17570152
TCONS_00006027 True 600 lncRNA 0.49 3 17582092 17587901

Neighbor

gene id symbol gene type direction distance location
XLOC_002690 ska1 coding downstream 1802 17543276 ~ 17550931 (-)
XLOC_002689 BX927385.3 coding downstream 9711 17533610 ~ 17543022 (-)
XLOC_002688 NA coding downstream 33699 17509980 ~ 17519034 (-)
XLOC_002687 slc2a11l coding downstream 51205 17485945 ~ 17501528 (-)
XLOC_002686 nt5c2l1 coding downstream 67969 17460358 ~ 17484764 (-)
XLOC_002692 BX927385.1 coding upstream 39227 17627128 ~ 17627253 (-)
XLOC_002693 stard7 coding upstream 112115 17700016 ~ 17710637 (-)
XLOC_002694 NA coding upstream 143392 17731293 ~ 17745374 (-)
XLOC_002695 NA coding upstream 312410 17900311 ~ 17911539 (-)
XLOC_002696 si:dkey-242g16.2 coding upstream 399387 17987288 ~ 17988779 (-)
XLOC_002685 NA non-coding downstream 110312 17437490 ~ 17442421 (-)
XLOC_002684 FP091248.1 non-coding downstream 210252 17342365 ~ 17342481 (-)
XLOC_002678 BX324123.4 non-coding downstream 419823 17104298 ~ 17132910 (-)
XLOC_002697 NA non-coding upstream 686113 18274014 ~ 18282956 (-)
XLOC_002698 NA non-coding upstream 696513 18284414 ~ 18286943 (-)

Expression


Co-expression Network