XLOC_002685


Basic Information

Item Value
gene id XLOC_002685
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17437490 ~ 17442421 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006022
ctcacatcaagtCACTAGGTTAAATCTGGGtcagttcagttggcatttctgtttggagtgtgcatgttctccccataatAGGGAGGGTTTTCtccagatgctccagtttcccccacagtccaaagactaagataaacaaaattggccatagtgtctgtgtgtgaatgagtgtgtatggatgtttcccagtactgggttgcagctggaagggcatccgctgtgtaaaaaaatgtatgctggataaggactaagctgaaggaaaatgaatgaatagtataacataatataatataatataatataaaataatataatataataatttacttaaTTAGCATTGttttagtattaaaataaaaaaactgattctaaaaataattgtaaaaaaaaattaagaaatgttGCAATTTAAACTTCTACGATGTCATTTCTATGAAGGCAAAACTCTTTATTATAGGACAGGCATTGCCTCTTCGCCAACTCTTGCCTCTCCTTTGATTGAATCTCACATGTGTCTGTTTCTACAAATGAAGGAGTGTTTTTAAATGACATCTGCAGTTTCCACTGAGTCTCATTCACACCGCAGTACAGTTCAACCTCCGAGTCCCAAGATGCTCTGGTCAATGTGTGAACAAGGCTGAACCCTACAAATTCCTCAGTCCAGCGTCTCTCTGACCCCGATGACCCCCAGAACCACCCTGATGACCCGCAGATTAACCCATAAACCACCATCAGCATCGGTGCTCGACTGTTTCAACAGATGAAATGAGCGGCCATTTTCCCTCGACGAATCTCAACCTCTACCCGAGCAGTGACGTAACGAGTTTTGGGTCACGAGACAAAACATTTAacgttaacattttattttatttttttggtttattttcctgttattattattagttgtttttcCTTCTGTATGTGACATTTACAGTTACGAATTATAATTGTCATATTTCCCTGTTATTGTACAagtttgacaataaaaaaaaaacagatgaacaaaaaagagacagttcacagtaaaaaaaaaaataaacaaacatttaacatttcaaTGCAATAATTATAATCAGACATCCATGTGTTGATTCGAATTACATTAGGAAGTATTTATATTGTTTAGTATTGCTATCACATCAAACTTACACTactgcaaatattttattttacgtttaaagataaatagatacattttagcgtttattattataaattgaaAAAATTTCTAGTAATACCAATCGCATTAAAATGTCTATAAACTGGACACGGAGGCTGTATGCAGTTCTCAGTGGTGAAGTAGTGTTACAGTGACACCTGGTGGACGCAAAGTGAAGCGTTTCACGTgtgcaaaaacattttaatatcaaTAAACGCAACGACGAGCTTATTAAACATCAAAAGCCTTTTAAAACGCAAGTATTTAGTTCAAGGCATGTCATGGATAAtacatgaagtaaaaaaa
>TCONS_00006023
gtttcccccacaagtccaaagacgtgtggtacaggtgaattggTTTCCACTGAGTCTCATTCACACCGCAGTACAGTTCAACCTCCGAGTCCCAAGATGCTCTGGTCAATGTGTGAACAAGGCTGAACCCTACAAATTCCTCAGTCCAGCGTCTCTCTGACCCCGATGACCCCCAGAACCACCCTGATGACCCGCAGATTAACCCATAAACCACCATCAGCATCGGTGCTCGACTGTTTCAACAGATGAAATGAGCGGCCATTTTCCCTCGACGAATCTCAACCTCTACCCGAGCAGTGACGTAACGAGTTTTGGGTCACGAGACAAAACATTTAacgttaacattttattttatttttttggtttattttcctgttattattattagttgtttttcCTTCTGTATGTGACATTTACAGTTACGAATTATAATTGTCATATTTCCCTGTTATTGTACAagtttgacaataaaaaaaaaacagatgaacaaaaaagagacagttcacagtaaaaaaaaaaataaacaaacatttaacatttcaaTGCAATAATTATAATCAGACATCCATGTGTTGATTCGAATTACATTAGGAAGTATTTATATTGTTTAGTATTGCTATCACATCAAACTTACACTactgcaaatattttattttacgtttaaagataaatagatacattttagcgtttattattataaattgaaAAAATTTCTAGTAATACCAATCGCATTAAAATGTCTATAAACTGGACACGGAGGCTGTATGCAGTTCTCAGTGGTGAAGTAGTGTTACAGTGACACCTGGTGGACGCAAAGTGAAGCGTTTCACGTgtgcaaaaacattttaatatcaaTAAACGCAACGACGAGCTTATTAAACATCAAAAGCCTTTTAAAACGCAAGTATTTAGTTCAAGGCATGTCATGGATAAtacatgaagtaaaaaaa
>TCONS_00006025
ACAGTTTTAACCTGCATACTTGTCATTCATGCAGAAATGAAACAGGAGTGTTTTTAAATGACATCTGCAGTTTCCACTGAGTCTCATTCACACCGCAGTACAGTTCAACCTCCGAGTCCCAAGATGCTCTGGTCAATGTGTGAACAAGGCTGAACCCTACAAATTCCTCAGTCCAGCGTCTCTCTGACCCCGATGACCCCCAGAACCACCCTGATGACCCGCAGATTAACCCATAAACCACCATCAGCATCGGTGCTGTAAGCTCAAAACATACAGAGCGTAACCTACATGCCTGCTGTCCTCGGATTATTTATGACCTCATACATATTTCAGAACTGAAATAGCGGTATTTTAAGATGATCAAAATTTAGAATGAAGCCATTTAGATTTGCACGCCCATCAAAATATTATCTTGTAAAAATCATGATTGGGCTTTTGATTGCATTTATGATCATATTGCATTGTGTTATGCTTtgtccacactgtaaaaacaaatcctggttgccttaaacttttaagctgaatcaaattaaccttatgtgTCCACTGaacttatattttgttaaactgacttaaaacagaaCGCACAACTTATAGAATTAAGTTAGAAGActattaacttagtttaataggtAATGATCTAAAGTATGCTGTCAAGACGAATTGATAATAGAATTTTTGACAGTGCAAAAGAAAACtgattttacctttttttgttataatttgaAGTAAGTAAATAACCAGGTGTAACATAAAAGCCCAACATATTTAAACTATCATTTAGGTTTGTGTAAAAATATATCTAATGATGAACATTTAATGTACTGAAACATGCGTTTGAGGAccatttgtcattcattcattataaaaaaaactggaaaaaagaAACCACTTGACAATTTCCTATTTTGGGGGGGATTTATTAGTtctgggtttgagtaaaatgttaaaattggTTTTGTTCTATATTATCAATCAAATGCACCACATATTTGTTTAAAGCTAATTAAATTTCTTCTTTTATGTCACAGTTGCAAATGTTTTTAATCCTTGTAATTGAAAATCAGCGTCATTGTACCAAATATGAAAATATTGCTATTATGTtgtccaaaaaaacaacaacttcatcCTATTTTTGGCCATGTTATATAGCAATTGTTGAACGAAATTGCAAAATGAATCAAATCATGTTCAGCCTTTTTTTCTGAGCCACGATTCTACTTAAAAAAGTAGAATCTGTTAAAGTCTGTTTGACTGTTAAAGTCAACTACTAAAGGTAAaagattgattttaaaataatgaaaaagtatTATCCATATTTTAATGTGTACACTGACAGACATAATTTAGGCTTAATTGATTATACAaattctttcattttaaaaagatttctTAAAATGATCCTCCAtgatttttaaagaacatttatcTGTTCATCGTTGTATCATTCAGCACTGCTTTAGCTTAAATTATTTTATCAATGAACTATTGATTATTTGCTGAAGATGAATAAACTGTTGTTTTTGCTTCACCTTATCGCCAGTGAGCCCCATGTTCTTATTTAGCAATAAAAGATGATGTAACAAATTGTGAAGTACATTAAACCTACATAATCTTTCTTAATAAGTTTATAAACTTCCATTAAACTGACATTTTTTCTGACTATAACTCATTGGCTTTACAGGGTTAATATGATCACTTGCAAGTTTATTTGTGATGTTTTATGGATATTCTTCTCATCTTAACATGCAGAAAGAGACATCTTCAAAAAACTCCTCTACCGTGTGTTGATTCCTCTGAAAAAAGGCAAACAGGCTCAGTCAAATACTAAGTAGTTAAAAAAACGCTGTGAAAACTTTTACAGCTAAAATCATTCTTGTTGACCAAGTGTTCACTAACCACGGCTCATGTTGTTAGTAAAGGTTTAACAGCAGCAGTAACGTTACCACTTGACTAGTTTTTTTTGTAGCGACTGTTTCAACAGATGAAATGAGCGGCCATTTTCCCTCGACGAATCTCAACCTCTACCCGAGCAGTGACGTAACGAGTTTTGGGTCACGAGACAAAACATTTAacgttaacattttattttatttttttggtttattttcctgttattattattagttgtttttcCTTCTGTATGTGACATTTACAGTTACGAATTATAATTGTCATATTTCCCTGTTATTGTACAagtttgacaataaaaaaaaaacagatgaacaaaaaagagacagttcacagtaaaaaaaaaaataaacaaacatttaacatttcaaTGCAATAATTATAATCAGACATCCATGTGTTGATTCGAATTACATTAGGAAGTATTTATATTGTTTAGTATTGCTATCACATCAAACTTACACTactgcaaatattttattttacgtttaaagataaatagatacattttagcgtttattattataaattgaaAAAATTTCTAGTAATACCAATCGCATTAAAATGTCTATAAACTGGACACGGAGGCTGTATGCAGTTCTCAGTGGTGAAGTAGTGTTACAGTGACACCTGGTGGACGCAAAGTGAAGCGTTTCACGTgtgcaaaaacattttaatatcaaTAAACGCAACGACGAGCTTATTAAACATCAAAAGCCTTTTAAAACGCAAGTATTTAGTTCAAGGCATGTCATGGATAAtacatgaagtaaaaaaa
>TCONS_00006024
ACAGTTTTAACCTGCATACTTGTCATTCATGCAGAAATGAAACAGGAGTGTTTTTAAATGACATCTGCAGTTTCCACTGAGTCTCATTCACACCGCAGTACAGTTCAACCTCCGAGTCCCAAGATGCTCTGGTCAATGTGTGAACAAGGCTGAACCCTACAAATTCCTCAGTCCAGCGTCTCTCTGACCCCGATGACCCCCAGAACCACCCTGATGACCCGCAGATTAACCCATAAACCACCATCAGCATCGGTGCTCGACTGTTTCAACAGATGAAATGAGCGGCCATTTTCCCTCGACGAATCTCAACCTCTACCCGAGCAGTGACGTAACGAGTTTTGGGTCACGAGACAAAACATTTAacgttaacattttattttatttttttggtttattttcctgttattattattagttgtttttcCTTCTGTATGTGACATTTACAGTTACGAATTATAATTGTCATATTTCCCTGTTATTGTACAagtttgacaataaaaaaaaaacagatgaacaaaaaagagacagttcacagtaaaaaaaaaaataaacaaacatttaacatttcaaTGCAATAATTATAATCAGACATCCATGTGTTGATTCGAATTACATTAGGAAGTATTTATATTGTTTAGTATTGCTATCACATCAAACTTACACTactgcaaatattttattttacgtttaaagataaatagatacattttagcgtttattattataaattgaaAAAATTTCTAGTAATACCAATCGCATTAAAATGTCTATAAACTGGACACGGAGGCTGTATGCAGTTCTCAGTGGTGAAGTAGTGTTACAGTGACACCTGGTGGACGCAAAGTGAAGCGTTTCACGTgtgcaaaaacattttaatatcaaTAAACGCAACGACGAGCTTATTAAACATCAAAAGCCTTTTAAAACGCAAGTATTTAGTTCAAGGCATGTCATGGATAAtacatgaagtaaaaaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0090287 regulation of cellular response to growth factor stimulus biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0071363 cellular response to growth factor stimulus biological_process
GO:0006412 translation biological_process
GO:0070848 response to growth factor biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007423 sensory organ development biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006022 False 1465 lncRNA 0.35 2 17437490 17440666
TCONS_00006023 False 950 lncRNA 0.36 3 17437490 17441982
TCONS_00006025 False 2689 lncRNA 0.32 2 17437490 17442421
TCONS_00006024 True 977 lncRNA 0.35 3 17437490 17442421

Neighbor

gene id symbol gene type direction distance location
XLOC_002684 FP091248.1 coding downstream 95009 17342365 ~ 17342481 (-)
XLOC_002683 GNAZ coding downstream 153435 17254502 ~ 17284055 (-)
XLOC_002682 rab36 coding downstream 205118 17223681 ~ 17232372 (-)
XLOC_002681 depdc5 coding downstream 215407 17171604 ~ 17222083 (-)
XLOC_002680 ywhah coding downstream 267404 17166035 ~ 17170086 (-)
XLOC_002686 nt5c2l1 coding upstream 17937 17460358 ~ 17484764 (-)
XLOC_002687 slc2a11l coding upstream 43524 17485945 ~ 17501528 (-)
XLOC_002688 NA coding upstream 67559 17509980 ~ 17519034 (-)
XLOC_002689 BX927385.3 coding upstream 91189 17533610 ~ 17543022 (-)
XLOC_002690 ska1 coding upstream 100855 17543276 ~ 17550931 (-)
XLOC_002678 BX324123.4 non-coding downstream 304580 17104298 ~ 17132910 (-)
XLOC_002676 NA non-coding downstream 348579 17085524 ~ 17088911 (-)
XLOC_002674 NA non-coding downstream 410379 17016799 ~ 17027111 (-)
XLOC_002673 NA non-coding downstream 426592 17006225 ~ 17010898 (-)
XLOC_002692 BX927385.1 non-coding upstream 184707 17627128 ~ 17627253 (-)
XLOC_002694 NA non-coding upstream 288872 17731293 ~ 17745374 (-)
XLOC_002695 NA non-coding upstream 457890 17900311 ~ 17911539 (-)

Expression


Co-expression Network