XLOC_002680 (ywhah)


Basic Information

Item Value
gene id XLOC_002680
gene name ywhah
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17166035 ~ 17170086 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004981
GTTCGCTGGGATTGACAGGACGCTTGCAGCAGCAGTACCTCTCAAGACGAAGGAAAAAATATATCCGGCGAAACTCGTAGGACTTTGAGGGCTGGGAGGGGAAAAAGCGTTACGAATACATTTCAGACATAACAAAAAGACATTAATCTGCAACTCCAACCTTTGGCTCGCCGTTCCTCCCTCACGTGCGCGGCTGCTCCAGATTCTGCTCGCGCCTGTGCTAACCGGAGCGCGCGCCCGCTTTCGCTCACACAAACCAGTGTGATCCGCTGAAAAAGACCGAACTCCGGTGCGAACCGACAGCGTTTGACCAGAGAGCATGGCTGACCGGGAACAACTGATCCAAAGAGCCCGTCTGGCGGAGCAGGCGGAGCGCTATGATGATATGGCCTCCGCGATGAAGCTGGTCACAGAGTTGAATGAGCCCCTGTCCAACGAAGACCGCAATTTGCTCTCAGTGGCCTACAAGAATGTGGTGGGGGCTCGGCGGTCCTCTTGGCGCGTAATATCCAGCATTGAGCAGAAGACGGCGGCGGACGGCAACGAGAAGAAGCTGGAGCTTGTGCGTGTCTACCGAGAGACGGTGGAGAAGGAGCTGGAGTCAGTGTGCCAAGATGTCCTAACCCTGCTGGACCAGTACCTCATCAAGAACTGTGACGAAACCCAGGTGGAGAGCAAGGTCTTCTACTTGAAGATGAAGGGTGACTACTATCGGTACCTGGCCGAGGTGGCCACTGGTGAAAAGAGGGCCTCTGCTGTCGAATCATCTGAAGGGGCTTACAAAGAGGCTTTCGATATTAGCAAGGGCATGCCTGCCACCCATCCTATTCGCCTGGGCCTGGCACTCAACTTTTCCGTCTTCTACTACGAGATCCAAAATGCACCCGAACAGGCCTGCCAGCTCGCCAAGGAAGCCTTCGATGATGCTATCGGCCACCTGGACAATCTGAACGAAGACTCCTATAAGGACTCCACGCTCATCATGCAGCTGCTGCGGGACAACCTCACCCTGTGGACCAGCGACCAGCAGGACAGCGAAGGAGGGGATGCGAATAACTGAAGGATCAGCCGTGACCGCTCTTACTTCTTGCTGTAGCAGCACCCGTCTGTCTTCTTCAGTCTTTTTTCTCTCTGTCTGCTCCTTcatcctctctccctctctttctccatTCCATCTTTCCTGTCTCTTTGTGGCGCCTCAATGCTCTTCTTTGGTTCCTCAGGGCAGCACTTCACACTGACTTTTGATTGCTCTCACAATCCTTTTACCCCCTTTTCCACCAACAGGATGTCGGTACTTGGAACTGTTGAGGATAAAATATTTTATCACAGgataaaatagaaagaaaaaagaaaattgttacatttttacttCACAATTCGGACAGTTTTTTGgccattttgcttgcaaaagtcagaattgtaagatataaactttaaaaaaaattcaatctgaTATTATATCTTAAAATTCTATTGCTTAAAATTGCAAAATACAAAGATGCAATCCTGAAACAGGAGTGAAATATCATTTTAGAcccagatttgtgagaagaaaaGATGAAATTCAAAGAGTTTACATTTAAAGTTCAAACTCTTTTCTCAGAATTACAGGTTTGTCTTTTGCGAATTTGACTTGCAGTGAAAAAAAGAACTGCAGAAAGTTgaacatttctaaaatattactttgcatgtttgatttaaaatatttaaaaaaggatttGGCAACAcgcattattaaaaaaacaataaaatgactttaaatattCACGTGTAAACTTGCTGCATTTAAAAGCATATGACCGCAAACTACGATCCATTATATATTACACATGATGCACACTGACTTTGAATGCTAATATATTCACAAGACACATAAGAAAACACATTAAAGCCTCATGTTATTTGTCAGTCATCAGTGATGTCATTGTTCGACCCTCATTCGAATTCTGATACAATTCTGTGAAGAAGGGGTGTTTATATATCCTCAATTGTTCTGTTTTCCCTCTCTCCCCCTGTCCCTGACTTCGGTTTCTGTATACGATTCTCTTCTTTCTCCCTGCGACGAGTTGCTGATAGCCTGCTGGTCTCCACGTGACATTTATTTAGTGTGTTTTTGTTAAGGACTCGATCTTCGTAGAATCGCTGTAACACCTATTACAGGATGAGATCTTGAGAACATGGCACAGTATAGTGCTAATGCTACACCTTATTACGTTGTTCTTCTTCTTCACTTGTCTTTGATCTGTACCTCCATCACTGCTTAGATGTGTTTGTCGTTCCCCAAAGCTCACCTTGTACACCTTGCTAGCCCTGTGAATTGTGTACATCTGCTGATCTCACAACAGTTCGTCGCCATGTGAAATGTGGGCGACTCTCTTTTGTGAGACTCAGAGATCAAGAGTCTTTTGATTAGGATTACATATGCAAGGTTATGAAAGAATGACATTAAAGACATTGCTTACCATGGGAACTGTCAAAA

Function

symbol description
ywhah Predicted to enable monooxygenase activity. Is expressed in central nervous system; head; neural tube; neurons; and otic vesicle. Orthologous to human YWHAH (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005575 cellular_component cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2191 Predicted to enable monooxygenase activity. Is expressed in central nervous system; head; neural tube; neurons; and otic vesicle. Orthologous to human YWHAH (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta).

Ensembl:

ensembl_id ENSDARG00000005560

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004981 True 2482 mRNA 0.45 2 17166035 17170086

Neighbor

gene id symbol gene type direction distance location
XLOC_002679 slc5a1 coding downstream 6274 17135631 ~ 17159761 (-)
XLOC_002678 BX324123.4 coding downstream 33125 17104298 ~ 17132910 (-)
XLOC_002677 RNF208 coding downstream 62384 17102902 ~ 17103651 (-)
XLOC_002676 NA coding downstream 77124 17085524 ~ 17088911 (-)
XLOC_002675 fam166b coding downstream 82658 17077177 ~ 17083377 (-)
XLOC_002681 depdc5 coding upstream 1518 17171604 ~ 17222083 (-)
XLOC_002682 rab36 coding upstream 53595 17223681 ~ 17232372 (-)
XLOC_002683 GNAZ coding upstream 84416 17254502 ~ 17284055 (-)
XLOC_002684 FP091248.1 coding upstream 172279 17342365 ~ 17342481 (-)
XLOC_002685 NA coding upstream 267404 17437490 ~ 17442421 (-)
XLOC_002674 NA non-coding downstream 138924 17016799 ~ 17027111 (-)
XLOC_002673 NA non-coding downstream 155137 17006225 ~ 17010898 (-)
XLOC_002666 NA non-coding downstream 1441931 15716739 ~ 15724104 (-)
XLOC_002688 NA non-coding upstream 339894 17509980 ~ 17519034 (-)
XLOC_002689 BX927385.3 non-coding upstream 363524 17533610 ~ 17543022 (-)
XLOC_002692 BX927385.1 non-coding upstream 457042 17627128 ~ 17627253 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_06931421_06933921 YWHAG.S, 143G2, 143G1, YWHAH, YWHAG.L, YWHAG2, YWHAG, YWHAG1 coding CI01000304 null 6930738 ~ 6934059 (-)