RNA id: TCONS_00006022


Basic Information

Item Value
RNA id TCONS_00006022
length 1465
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_002685
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17437490 ~ 17442421 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctcacatcaagtCACTAGGTTAAATCTGGGtcagttcagttggcatttctgtttggagtgtgcatgttctccccataatAGGGAGGGTTTTCtccagatgctccagtttcccccacagtccaaagactaagataaacaaaattggccatagtgtctgtgtgtgaatgagtgtgtatggatgtttcccagtactgggttgcagctggaagggcatccgctgtgtaaaaaaatgtatgctggataaggactaagctgaaggaaaatgaatgaatagtataacataatataatataatataatataaaataatataatataataatttacttaaTTAGCATTGttttagtattaaaataaaaaaactgattctaaaaataattgtaaaaaaaaattaagaaatgttGCAATTTAAACTTCTACGATGTCATTTCTATGAAGGCAAAACTCTTTATTATAGGACAGGCATTGCCTCTTCGCCAACTCTTGCCTCTCCTTTGATTGAATCTCACATGTGTCTGTTTCTACAAATGAAGGAGTGTTTTTAAATGACATCTGCAGTTTCCACTGAGTCTCATTCACACCGCAGTACAGTTCAACCTCCGAGTCCCAAGATGCTCTGGTCAATGTGTGAACAAGGCTGAACCCTACAAATTCCTCAGTCCAGCGTCTCTCTGACCCCGATGACCCCCAGAACCACCCTGATGACCCGCAGATTAACCCATAAACCACCATCAGCATCGGTGCTCGACTGTTTCAACAGATGAAATGAGCGGCCATTTTCCCTCGACGAATCTCAACCTCTACCCGAGCAGTGACGTAACGAGTTTTGGGTCACGAGACAAAACATTTAacgttaacattttattttatttttttggtttattttcctgttattattattagttgtttttcCTTCTGTATGTGACATTTACAGTTACGAATTATAATTGTCATATTTCCCTGTTATTGTACAagtttgacaataaaaaaaaaacagatgaacaaaaaagagacagttcacagtaaaaaaaaaaataaacaaacatttaacatttcaaTGCAATAATTATAATCAGACATCCATGTGTTGATTCGAATTACATTAGGAAGTATTTATATTGTTTAGTATTGCTATCACATCAAACTTACACTactgcaaatattttattttacgtttaaagataaatagatacattttagcgtttattattataaattgaaAAAATTTCTAGTAATACCAATCGCATTAAAATGTCTATAAACTGGACACGGAGGCTGTATGCAGTTCTCAGTGGTGAAGTAGTGTTACAGTGACACCTGGTGGACGCAAAGTGAAGCGTTTCACGTgtgcaaaaacattttaatatcaaTAAACGCAACGACGAGCTTATTAAACATCAAAAGCCTTTTAAAACGCAAGTATTTAGTTCAAGGCATGTCATGGATAAtacatgaagtaaaaaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0090287 regulation of cellular response to growth factor stimulus biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0071363 cellular response to growth factor stimulus biological_process
GO:0006412 translation biological_process
GO:0070848 response to growth factor biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007423 sensory organ development biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004986 lncRNA downstream 257343 17179372 ~ 17180147 (-) False XLOC_002681
TCONS_00004985 lncRNA downstream 262680 17172959 ~ 17174810 (-) False XLOC_002681
TCONS_00006021 lncRNA downstream 348579 17085524 ~ 17088911 (-) True XLOC_002676
TCONS_00004976 lncRNA downstream 354359 17077604 ~ 17083131 (-) True XLOC_002675
TCONS_00006020 lncRNA downstream 410379 17016799 ~ 17027111 (-) True XLOC_002674
TCONS_00004994 lncRNA upstream 20123 17460789 ~ 17463417 (-) False XLOC_002686
TCONS_00006026 lncRNA upstream 69314 17509980 ~ 17511199 (-) False XLOC_002688
TCONS_00006027 lncRNA upstream 141426 17582092 ~ 17587901 (-) True XLOC_002691
TCONS_00005011 lncRNA upstream 290627 17731293 ~ 17745344 (-) False XLOC_002694
TCONS_00005008 lncRNA upstream 290627 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00004990 mRNA downstream 153435 17254502 ~ 17284055 (-) True XLOC_002683
TCONS_00004988 mRNA downstream 205118 17223681 ~ 17232372 (-) False XLOC_002682
TCONS_00004989 mRNA downstream 205573 17223985 ~ 17231917 (-) True XLOC_002682
TCONS_00004982 mRNA downstream 215407 17171604 ~ 17222083 (-) False XLOC_002681
TCONS_00004983 mRNA downstream 215765 17171742 ~ 17221725 (-) False XLOC_002681
TCONS_00004992 mRNA upstream 19692 17460358 ~ 17484762 (-) False XLOC_002686
TCONS_00004993 mRNA upstream 19695 17460361 ~ 17484764 (-) False XLOC_002686
TCONS_00004995 mRNA upstream 21877 17462543 ~ 17466990 (-) True XLOC_002686
TCONS_00004996 mRNA upstream 45279 17485945 ~ 17501528 (-) False XLOC_002687
TCONS_00005000 mRNA upstream 102610 17543276 ~ 17550239 (-) False XLOC_002690
TCONS_00004991 other downstream 95009 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004980 other downstream 280815 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004978 other downstream 304580 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004975 other downstream 354113 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004954 other downstream 1818475 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004997 other upstream 52815 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00004998 other upstream 69314 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004999 other upstream 92944 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00005003 other upstream 122309 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00005004 other upstream 186462 17627128 ~ 17627253 (-) True XLOC_002692

Expression Profile

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