RNA id: TCONS_00004976


Basic Information

Item Value
RNA id TCONS_00004976
length 874
lncRNA type retained_intron
GC content 0.48
exon number 5
gene id XLOC_002675
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17077177 ~ 17083377 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATATGGATCTGTTTCCTCCTAAATTTAGCAAAGTGCTGGTGACACCAGACCCGCAGTACATCCCAGGGTATGCAGGCTACTGTCCTCAGCTGAAGTATCATGTGGGCCAGACTTATGGTCAGTTGACAGCAAAGCTCCTAACTTCCCCGGAGGTATCCCACTCACAGAGGCTTGTGCTCCAAACCAGTCCTCTCTCATCCACAGAGAAGGAAACAGCATCCCGCAGTCAGATCTGGTGGAGCAGACATGGGGCAAGCAGGAACCTGGAAACTATGATCCCGGGTTACACAGGTTTCGTCCCATTGCGCCAAAACTACATCTGCAAAACGTATGCAGAGACCTGTCGAGATGCTCTGTCAGAGTTCAACCAGGAGCAAGCAAAGAGACTTCACAACGCTTCTGCTGACCTGTCTTTTCCTGTCATCAACAGTGTCCCAGACTTCAGACCTAGACGATCGAACAGCCCTCTGATAGCCCTTTCTAAAGATCCTGCTCCATACAAGGCCCCTGACCCTTGGAAGCCACCAGGCTCACCGTACTTCATGGAGGACAGTAGCCCACATAAGTATTTCATCTCAGGTTTTACTGGTTATGTCCCCAAAGCCCGGTTTCTCTTTGGTACTGGATATCCTACCATCACCAATAAGGCATTGATCCAGTTTAGCAAGGAAATGAAGGCAGGTCCGGCATCTTTGCAGAAATATAGCCTGCAGGAGGAGGATTCCTCCAACTTACCTCTGATACCCACAATATACCCCTCCAAAACAGGTCTCCTGCCATCCTACACAGGCCACATACCAGGTCAGTGAAGATAGTCATATATTAGCAGAAATTGTGCTGTTATAGAGCAAAATAAATCTGTCACTTTATG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-41 Orthologous to human FAM166B (family with sequence similarity 166 member B).

Ensembl:

ensembl_id ENSDART00000164918

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006020 lncRNA downstream 50493 17016799 ~ 17027111 (-) True XLOC_002674
TCONS_00006019 lncRNA downstream 58429 17016799 ~ 17019175 (-) False XLOC_002674
TCONS_00006018 lncRNA downstream 58434 17016799 ~ 17019170 (-) False XLOC_002674
TCONS_00005757 lncRNA downstream 66706 17006225 ~ 17010898 (-) True XLOC_002673
TCONS_00004971 lncRNA downstream 617927 16456335 ~ 16459677 (-) False XLOC_002671
TCONS_00006021 lncRNA upstream 2393 17085524 ~ 17088911 (-) True XLOC_002676
TCONS_00004985 lncRNA upstream 89828 17172959 ~ 17174810 (-) False XLOC_002681
TCONS_00004986 lncRNA upstream 96241 17179372 ~ 17180147 (-) False XLOC_002681
TCONS_00006022 lncRNA upstream 354359 17437490 ~ 17440666 (-) False XLOC_002685
TCONS_00006023 lncRNA upstream 354359 17437490 ~ 17441982 (-) False XLOC_002685
TCONS_00004973 mRNA downstream 209393 16857529 ~ 16868211 (-) True XLOC_002672
TCONS_00004972 mRNA downstream 582007 16473923 ~ 16495597 (-) True XLOC_002671
TCONS_00004969 mRNA downstream 603388 16313851 ~ 16474216 (-) False XLOC_002671
TCONS_00004970 mRNA downstream 606956 16399409 ~ 16470648 (-) False XLOC_002671
TCONS_00004968 mRNA downstream 1012419 16062144 ~ 16065185 (-) True XLOC_002670
TCONS_00004977 mRNA upstream 19771 17102902 ~ 17103651 (-) True XLOC_002677
TCONS_00004979 mRNA upstream 52500 17135631 ~ 17159761 (-) False XLOC_002679
TCONS_00004981 mRNA upstream 82904 17166035 ~ 17170086 (-) True XLOC_002680
TCONS_00004982 mRNA upstream 88473 17171604 ~ 17222083 (-) False XLOC_002681
TCONS_00004983 mRNA upstream 88611 17171742 ~ 17221725 (-) False XLOC_002681
TCONS_00004954 other downstream 1458589 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004948 other downstream 1737272 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004937 other downstream 2137258 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 2345205 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 2589450 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004978 other upstream 21167 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 62688 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004991 other upstream 259234 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004997 other upstream 410350 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00004998 other upstream 426849 17509980 ~ 17519034 (-) True XLOC_002688

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_06867535_06870134.mRNA True 1339 mRNA 0.45 6 CI01000304 6867117 ~ 6870134 (-)