XLOC_002653 (CT027820.1)


Basic Information

Item Value
gene id XLOC_002653
gene name CT027820.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 14732283 ~ 14732399 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004928
TCCATTAGCTCTACCTCtgtgcaactctcacatggttgcccactgaagctaagcagggctgcaccaggtcagtacctggatgggagaccacatgggaatgctaggttgctgccagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000106982

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004928 True 117 rRNA 0.54 1 14732283 14732399

Neighbor

gene id symbol gene type direction distance location
XLOC_002652 skor2 coding downstream 175305 14547941 ~ 14556978 (-)
XLOC_002651 ier3ip1 coding downstream 186625 14542726 ~ 14545658 (-)
XLOC_002650 hdhd2 coding downstream 191840 14525184 ~ 14540443 (-)
XLOC_002649 galt coding downstream 243765 14263684 ~ 14488518 (-)
XLOC_002648 BX000705.1 coding downstream 800587 13931569 ~ 13931696 (-)
XLOC_002654 smad2 coding upstream 138737 14871136 ~ 14943281 (-)
XLOC_002655 si:dkey-88l16.2 coding upstream 203646 14936045 ~ 14940346 (-)
XLOC_002656 NA coding upstream 298607 15031006 ~ 15042748 (-)
XLOC_002657 NA coding upstream 300573 15032972 ~ 15034960 (-)
XLOC_002658 cldn23a coding upstream 314438 15046837 ~ 15048781 (-)
XLOC_002647 BX293994.1 non-coding downstream 1120035 13612133 ~ 13612248 (-)
XLOC_002646 BX293994.2 non-coding downstream 1125140 13607027 ~ 13607143 (-)
XLOC_002643 CR759894.1 non-coding downstream 1427100 13305065 ~ 13305183 (-)
XLOC_002642 NA non-coding downstream 1430310 13298839 ~ 13301973 (-)
XLOC_002660 CT027832.1 non-coding upstream 350011 15082410 ~ 15086297 (-)
XLOC_002666 NA non-coding upstream 984340 15716739 ~ 15724104 (-)
XLOC_002673 NA non-coding upstream 2273826 17006225 ~ 17010898 (-)

Expression


Co-expression Network