XLOC_002656


Basic Information

Item Value
gene id XLOC_002656
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15031006 ~ 15042748 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006013
GTTTTTGTGAGAAAGATATTGAAAGTGTAGAACATATGTTTTTTCACTGTgaagttataaaacatttttggatggaatTTCAAAACTGGCTGCATTCCAAACAGATACAAATACAATCTTTAACTGTGGTCTCAATCAAAGTTGGTATATTTTTGAAGGATAAAGATCTAGGCTTTTTggtaaataatctaataattctAGCTAAACACAAAATTTGTAAAGGTGAAACCCCATTTCAATGGATGGAGGAATGATCTGAAAATGCTCGTAAGATCTCTACACTTCATAAGGAACAAAAATGCCCGAAAATTTTTACATGCCTTGAACTCGTTTCTATTACTTGATTAAGACTCTCACGccctacttttttatttaattgtatttatttatgtttttttgttttgtttttttgtgttatgTTCCTAGTAATATACTTTTATATCAACACTAACACTATAAGTATTGGATTGTTGTATATGTCGTAATGGTTTGTACTTGTACATACTTTGCGATAGCATTGAGCATCTGCCCCTGTGAGGCTCTGTGCACGGGCCTGGGTAGTGTTGTTGCTAATCAATAGTTTCTTTACACTTCTTTAGCAAAAACTGCCTTAATTTCACAATTACAACCAATATCAGGGACACATACACATACAGCAAATttgaaacacaaatgaaaaatCTACATCTACATGGAAAAACAGAGGAAGACATTAGCCAACAAAAAGTTTATCATGACTTCCAACATGTACTGCTTATTAACAAGCTGGCAGTGCCATCTAATGGCTCATcatcaataatacattttttggcaGCTTTCATAATTTGTTGTAAATGTGTGCATGTGAATTTTATACAACTTATAAAAATACAAGGGAATTTGTTCTTGTAGTTATTACTACATGATTGTCTTGTAAATGTAGCCTCAGtaaaaaacataatttgcatGATTAAAGACACAAAttgggaaataaataataatttaatgtgaaaATTTAACACAAAGAACTCTTAATCAGTCAGTGAGTTTGCCTGAAATAAGACAAAATTTAGCAGTGAATTATACAAACAAAGCAAATTTttattacagggtttctgcaggtttcaccaagtcaaattcaGGACTTTAAGATCTTTTTATGACCATCAAGAATGAAATTTTTAGACTTGCAtaagggctaaacactaaggtcCAGCAATAAAGAAAATGACTTGCCCCAtcaaaaaactaattctaatttcTTGGCAACATATTGTAATAACCATGTCAAAACAAGAAgacctttaatattttttaagttaacGTAAATTAAAACTTtcataaactaaatgtatgcacaacagactgttataatattagttataaacagagttttaagttttattgagatgtaatgTCAGTGATTGGATGCACGTTTAATCGATCGGGTAGCTTTGcataaacaaaagaataaaataacaccggtttataaattatttaagaccttcaaaacaacatttcagtcaATTTAGAACTTTTTAAGggctaaaatttagtttttggaaATTAAGACTGCAGACACCCTGTATTAGAAAATTCTGTACAGAAAACTAATAATGTTTAAATCAATCCTTTATGCAGAGAAAACAGGTGTGTAACttttaaagtaaaactaaaaGCAAGAGAGAGCCATGAGAATAGTGACTGTATATCATGAGCGCTTCAAAGAAAAAGACTCATCAATCAGTCTACGAATCTCATCTGCTTTCAGTCATTCAGACTCTCCTGTCTCGCATGAACTAAATCTAAACCCACAATAGCACTGAAATGCTTGGCATGTCTCAGCAACTAGTTTCTTTTATTTGAATGCACATGTATGGCCCCCGGCAAGTACAGGAGAGAAACCATCCAAAAAATGTTGTGAACTGCATGTGTTTTTGACacaaagggcacctatgatgaaaattaacttttgtaagctgtttgaacagacatgcgtgtacagttgaagtcagaattataagcccccctgagttattagcgcccctgtttatttttttcaccaatttctgtttaatggagggaagattgtttcagcacatttctaagcataatagttttaaaaaacttatttctaataacggatttattttatctttgacatgatgacagtaaataacattttacttgataattttcaagacacttctatacagcttaaagtgacaattaaaggcttaactaggttaataaggtgaactaggcaggtaagggtaattaggctagttattgtataatgatggtttgttctgtagattatcaaaaaaaaaaaattagcttaaaggggctaataattttgtcccaaaaatgtttttaaaaaaattaataactgcatttattctagctgaaataaaacaaataaaactttttccagaagaaaaaatattatcagacatactgtgaaaatttccttgctctgttaaaaataatttgggaaatattttaaaaaataaaataaaatcaaaagggggctaataattctgacttcaactgtatgtactgtgTGTCCAGGGTCATACTGGAGGTTTTTGGAATTTTGGACgtcaaaataggatccaaatccctgcaaTTCTGAGacccaccacaacgtgacgtaggagtgtggttttcccagGCCACCGAATTGACTGACAGCCGCGTAATAACATGCCTCCATAGTAACAAGTATAATTATAGTCACAAGACAGAACTAAAACAAAGCAACTGgcaataaaagatctgttcatctctctgtgatcatctgcacccAAAGAAAGAGTTTTGCAAGGTTAACAATTTTTTAagacatgtttgtaataaagtcattcttgtctgtcactgtaccGTTTATCTACATGAAGGCTACATGTGTCAGTGCAATACAGAGAGATCTCTATGGCTCTGACATGCAAGAGGTATGGGCGGGCAAGGAGAACCACAGGCACAGGCAATGAAAACTGCTACAGTGTGTTTAGAGCTGAACATCCCCATGTTCagaaggtataataaataatatgatgagtattttgagctgaagctttatagacacattctggagacacaaaagacttatcttaaatcttgaaaaagggcaAAACAGGTGCCCCTTAATATAGTTTGTTTAAACATGGAGTACATTCAGTGACACTTCTATTC

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006013 True 3174 lncRNA 0.33 2 15031006 15042748

Neighbor

gene id symbol gene type direction distance location
XLOC_002654 smad2 coding downstream 87725 14871136 ~ 14943281 (-)
XLOC_002655 si:dkey-88l16.2 coding downstream 90660 14936045 ~ 14940346 (-)
XLOC_002653 CT027820.1 coding downstream 298607 14732283 ~ 14732399 (-)
XLOC_002652 skor2 coding downstream 474028 14547941 ~ 14556978 (-)
XLOC_002651 ier3ip1 coding downstream 485348 14542726 ~ 14545658 (-)
XLOC_002658 cldn23a coding upstream 4089 15046837 ~ 15048781 (-)
XLOC_002659 cldn23b coding upstream 7721 15050469 ~ 15053614 (-)
XLOC_002660 CT027832.1 coding upstream 39662 15082410 ~ 15086297 (-)
XLOC_002661 spp1 coding upstream 77963 15120711 ~ 15128771 (-)
XLOC_002662 pum3 coding upstream 278774 15321522 ~ 15340450 (-)
XLOC_002648 BX000705.1 non-coding downstream 1099310 13931569 ~ 13931696 (-)
XLOC_002647 BX293994.1 non-coding downstream 1418758 13612133 ~ 13612248 (-)
XLOC_002646 BX293994.2 non-coding downstream 1423863 13607027 ~ 13607143 (-)
XLOC_002643 CR759894.1 non-coding downstream 1725823 13305065 ~ 13305183 (-)
XLOC_002666 NA non-coding upstream 673991 15716739 ~ 15724104 (-)
XLOC_002673 NA non-coding upstream 1963477 17006225 ~ 17010898 (-)
XLOC_002674 NA non-coding upstream 1974051 17016799 ~ 17027111 (-)
XLOC_002676 NA non-coding upstream 2042776 17085524 ~ 17088911 (-)

Expression


Co-expression Network