RNA id: TCONS_00006019


Basic Information

Item Value
RNA id TCONS_00006019
length 483
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id XLOC_002674
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17016799 ~ 17027111 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agcgccgGCGTCTTCAAATCTGTGTCTTGAACGTCTAGGTCTTGCACTCACAAATGGAAGGTCTCGTTGAATTTGGGCGCCCAGCTGTTGTTCTTGGATTTGGTGGTGAACTTGCGCTTCTTGTCGCTGAGGTGAGGGCCAATCATGGTGATCTCAACAAACGGCCTGAACATCCCAGACGTCTGCCACTTCAGATCATTAGCAGCTACCACTACACACAAAGACATGACATTCAGCCAACAGAAAATACACTGGTGGGACAGAAAAGTCACTTTAACACAGTAAGTACCTTTAACTGTAACTTTATGCTCTCCTGTGCCCGGGTGAGTGAAGAGATCGATTTGTATGGACACTTCCCCAACTGGTTTATCAACTCCTGAGCCTACAGAAACACATCTTTGCTTTAGCTTTGTTATATAGAGTCAGTTTTTAAGACCTAATTCTCTACTCTAAGACCTAATATAACCTAAAtctcataataaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005757 lncRNA downstream 5901 17006225 ~ 17010898 (-) True XLOC_002673
TCONS_00004971 lncRNA downstream 557122 16456335 ~ 16459677 (-) False XLOC_002671
TCONS_00006017 lncRNA downstream 1052770 15938913 ~ 15964029 (-) False XLOC_002668
TCONS_00005755 lncRNA downstream 1052814 15938913 ~ 15963985 (-) False XLOC_002668
TCONS_00004976 lncRNA upstream 58429 17077604 ~ 17083131 (-) True XLOC_002675
TCONS_00006021 lncRNA upstream 66349 17085524 ~ 17088911 (-) True XLOC_002676
TCONS_00004985 lncRNA upstream 153784 17172959 ~ 17174810 (-) False XLOC_002681
TCONS_00004986 lncRNA upstream 160197 17179372 ~ 17180147 (-) False XLOC_002681
TCONS_00006022 lncRNA upstream 418315 17437490 ~ 17440666 (-) False XLOC_002685
TCONS_00004973 mRNA downstream 148588 16857529 ~ 16868211 (-) True XLOC_002672
TCONS_00004972 mRNA downstream 521202 16473923 ~ 16495597 (-) True XLOC_002671
TCONS_00004969 mRNA downstream 542583 16313851 ~ 16474216 (-) False XLOC_002671
TCONS_00004970 mRNA downstream 546151 16399409 ~ 16470648 (-) False XLOC_002671
TCONS_00004968 mRNA downstream 951614 16062144 ~ 16065185 (-) True XLOC_002670
TCONS_00004974 mRNA upstream 58002 17077177 ~ 17083180 (-) False XLOC_002675
TCONS_00004977 mRNA upstream 83727 17102902 ~ 17103651 (-) True XLOC_002677
TCONS_00004979 mRNA upstream 116456 17135631 ~ 17159761 (-) False XLOC_002679
TCONS_00004981 mRNA upstream 146860 17166035 ~ 17170086 (-) True XLOC_002680
TCONS_00004982 mRNA upstream 152429 17171604 ~ 17222083 (-) False XLOC_002681
TCONS_00004954 other downstream 1397784 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004948 other downstream 1676467 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004937 other downstream 2076453 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 2284400 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 2528645 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004975 other upstream 58258 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 85123 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 126644 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004991 other upstream 323190 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004997 other upstream 474306 17493481 ~ 17501404 (-) True XLOC_002687

Expression Profile

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