RNA id: TCONS_00004969


Basic Information

Item Value
RNA id TCONS_00004969
length 8283
RNA type mRNA
GC content 0.48
exon number 63
gene id XLOC_002671
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 16313851 ~ 16495597 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAATGGAAAAGAGGCCACACAGCTGGTAAATCATGAGATAATCACAACAtatggttggttgtttggttggttggatgtAGTAttttcttttttaagcCCTAATGTGTGTGGATCTCGTCTGCAGTCCTTCTGTTGTCCAGGCTGGAAGACTCTGCCTGGGGGCAACCAGTGTGTTGTGCCTATTTGCCGGAGTGACTGTGGGGATGGTTTCTGCTCCAGACCTAACATGTGCACATGTCCTGGTGGACAAACAGCTACAACCTGTTTTACTAAATCATCCAAACAATGCAATATAAGGTGTATGAATGGAGGAGTGTGTGAAGATGACTATTGCCAGTGTCCAAAGGGATATACAGGAAGCTTTTGTGGACAACCTGTCTGTGAAAAAAACTGTCAGAATGGTGGACACTGCATTGGACCGAACAGATGCGCGTGTGGATACGGCTTCACTGGACCACAGTGTGAGAGAGACTACCGGACAGGCCCATGCTTCATCCAAGTGCACAGCAGGAAGTGTGCAGGTCAGAGCAGTGAATTTGTTTGCAGTAAGGCCTTGTGCTGTGCCACAGTGGGTCAAGCGTGGGGTCACTCGTGCGAGCAGTGCCCACCTATCAGCTCGCCCTGCACCAGAGGGTTCATCCCAAACACCCGCACAGGAGCCTGCCAAGATGTTGATGAATGCAAGGTTGTCCCCGATCTGTGTAAAGGAGGAAGATGCATCAACACATTGGGTTCATATCAGTGCACGTGTCCTGTCGGTTACCAACAGCATGTGAGCATTTTGAAGTGCGAGGATGTGGATGAATGCTCCACCATTGAACGTGCGTGTGAAGCGGGACACTGCATTAATTCGGCGGGCAGTTTCTCCTGTGTGTGTCCTTCTGGATATGTGCTGTCTGCAGACCGGACTCGCTGTCTTGACCAGCACACAGGGATCTGCTTTGCGTCAGTTGTGAATGGACGCTGTGCTCATGAAATCAGCGGACGTTTCAATAAAATCCAGTGCTGCTGTGATCGTGGCCGGTGCTGGAGTCAAAGAACAACTCATGAAATGTGTCCTGTACCAGGATCAGGTGATTATATAACTCTTTTcaacctttgctttgtttttttTGTTTCCCCTAATGACCAGATACTTCACCCACATAATGGCAATGGACAAATAAAACCCCAGATTCGCCAAACACCTCAAATTCTGCAGTTTCCACAGATTCCACAGATCCCAAGGCATGACAATGGATTTAAACCACAACGACCTGTTGtTAGTGTGAATGAGACTGTGAACAGGTGCCGTTTGCTTCCTAATTTGTGTCTGAATGGACGCTGTATTCCCATGGAGTCTGACTACCGATGTGACTGTAACACCGGATTCAAAGAAGACAACAGAGGAGAGTGCTCAGATGTAGATGAGTGTGAGTTTGACCCCTGTGCTAATGGAAACTGCATCAACACTCCTGGTTCCTACTACTGCAGATGCCACACAGGCTTTCTTAGGGTTCCAGATATTGATGAATGTCTTCAGAATGGAGTGCTCTGTAAGAACGGCCGCTGTCTGAACACTGAGGGAAGCTTTCAGTGCATCTGCAACTCTGGATTTAAGCTTTCACCTGATGGGAGAAACTGTGTAGATCATGATGAATGTGCTGCCACAAACATGTGTCTTAACGGCATGTGTATCAACGAAGACGGCAgctttaaatgtgtgtgtaaacCTGGATTCACCCTCAACTCTAGTGGACGATACTGTACAGATATCGATGAGTGCCGGACTCCAGGTGTGTGCATGAATGGACGATGTGTAAACACACAGGGCTCTTTCAGGTGTGAGTGTTTTGCAGGTCTTACTGTTGGAATAGACGGCCGAACATGTGTAGacacacacatgcgtAGCACCTGTTATGGGGCTGTAAAAAGAGGTTTGTGTTTACGACCCTTCCAGCGTGCTGTCACCAAGTCACAGTGCTGCTGTGCCAACCCTGACTATGCTTTTGGTGAACCCTGCCATCCCTGCCCTGCCAAACACTCAGGTACAGCTATTACCCATgCAGACATTAATGAGTGTGCTCTGGATCCGGATATCTGCTCAAATGGAGTGTGTGAGAATCTCCGAGGAAATTTCCGCTGCGTCTGTAACATTGGCTATGAAAGTGACCAGAGCGGCAGAAACTGTTTAGATATTGATGAATGTGTGGTGAACAGTCTCCTCTGTGATAATGGCCTGTGCCGGAATGTTCCAGGAAGCTACAGTTGCACCTGCCCGGCGGGGTTCATCTTCAGACATGACACAGAGACATGTGAGGatgtgaatgagtgtgtgagcaGCCCATGCGTCAATGGAGTGTGTAAAAACAGTGCAGGCTCTTTCTACTGTGAATGTTCACAAGGAAGTAAACTGGACAGCACTGGACTTTTATGTGTTgACAGTGTGAAGGGTTCATGCTGGTTAACTCTTCAGGATGGTCGTTGTGAAGTTAACATCAACGGAGCTACACTGAGGTCACAGTGCTGTGCCACACTAGGACTGGCGTGGGGCAGCCCATGTGAACCATGTCAAACTGATCTAGTGTGCGAACGAGGATTTGCTCAGTCAAGAGGGGCTTCATGTGAAGatgtgaatgaatgtgagGTGTTTCCTGGTGTGTGTCACAATGGACACTGTGTGAACACTAGAGGCTCATTTAAATGTCAGTGCCCAGAAAGCCTCACACTGGATGTCACTGGACGCCTCTGTGTTGATGTTCGTTCGGAGCCGTGCTTTCTTACTTACGAAGAAGATGTGTGTACACAGCCGGTACCAGGACGCTTCCGCATGGACATGTGTTGCTGTACGGTGGGTTTGGCTTGGGGCAAAGATTGTGACTTATGTCCTGAGCCTGGTACTCGGCAGTTTGACACCCTGTGCCCAAGAGGACCAGGCTTCGCCAACAAAGGAGACtTTATAAATGGAGCTATTCCCTCTTCATCAGATATCAATGAGTGCAAAGTTTTCCAAAGCATTTGTGTCCATGGGAAATGTCGGAACACCATTGGGAGCTTCAGATGTCGCTGTGATAGTGGATTTGCACTGGATACCAATGAGAAAAACTGCACAGATATTGACGAGTGCATGATCTCTCCTGATGTCTGTGGTCATGGCACATGTGTGAACACTTTGGGCAGTTTCCAATGTGACTGTTTTCCTGGCTACGAAAGTGGAATCATGATGATGAAGAACTGCATGGATATTGATGAATGTGAGCGTAACCTTTCACTGTGCAATGGAGGCACCTGTGAAAACACTGACGGCAGCTACAAGTGTGTGTGTCCGCCTGGTCATCATCTGTCTGTGGATGGCAGTGCCTGTGAAGACGTGAACGAGTGTGATCTGAGTAGCACACTTTGTCCTAATGGCTGGTGTGTGAATTTGGTGGGAACCTACCAGTGCTCTTGTAACTCTGGCTACCAGACGACACCTGATTGGAAGGGTTGCACAGATATAGATGAGTGCACAATAGAGAACGGAGGATGTGAGCTGTACTGTAGTAACTCAGAGGGCAGTTACTCCTGCAGCTGTGGTCAGGGTTACAGTCTCACGCCGGACCAGCGGACATGTTCAGatgtgaatgaatgtgaagAGGTTTTAGACATCTGTGAAGGTGGTCAGTGCACTAACGTTCCTGGAGCATATCATTGTTTGTGTTACGAAGGATTTATGGCTTCCGTGGACATGAAGACATGTATTGatgtgaatgagtgtgaactGAACGACAACATCTGTGCATTTGGGGAGTGTGAGAACACCAAGGGTTCTTTCATCTGTCATTGTGACATGGGTTACGCCGTAAAAAAAGGAACCTCTGGCTGCACTGATGTTAATGAGTGTGAGATTAACAGTCATAACTGTGACACACATGCCACCTGTGTCAACACACCAGGACATTACCACTGCTCCTGCGGGGACGGATGGTTTGGAGATGGAGTCAAATGTGCTGATGTGGATGAGTGTGCTAACAGGACTAGCGTCTGCAGCGCCGATGCCGAGTGTGTGAACACAGCTGGCTCGTACCACTGTGAATGTTCAGACGGGTTTATTGGAGATGGGGTTATCTGCTCAgATTTGGATGAATGCGCTGAAGATGTGGATCTGTGTGAAAATGGCCAGTGTCTAAATGTTCCTGGCAGCTATCGCTGTGAATGTGAGATGGGCTTCACACACACTTCAAACAGAAAAACCTGTCGAGATATAGACGAGTGCTCCTTCCAGAACATCTGTGTGTTTGGCACATGTCAGAATATTCCAGGAATGTTTCGCTGTATTTGTGATGAGGGGTATGAGCTGGACAGGACAGGTGGAAACTGCACAGATGTGGACGAGTGTCTCGATTCCTTAAACTGTGTTAATGGTCACTGTGAGAACACAGCCGGCTCGTACCAGTGTAACTGTCCTATTGACTTCGAGCTCAATCCTACTGGAATTGGATGCGTTGACACCCGGGTTGGAAACTGTTTTCTGGAGGTGGCGTACAATAGTAAGCTGGCATGTAGTGCTGAAATTGGATTTGGAGTCAGTCGTTCCTCATGTTGCTGTTCTCTGGGACGGGTGTGGGGTTACCCATGTGACCACTGCCCTACACTCAACACCTCGGAGTATAACACACTCTGTCCTGGAGGAGAGGGGTTCAAACCCAACCCTGTCACCATCATCTTGGAAGATATCGATGAGTGTCAGGAGCTGCCCGGCGTCTGTCAGGGTGGAAACTGTGTTAACACATTCGGAAGTTTCCAGTGTGAATGTCCAGCCGGATTCTACCTTAACACACAGAGCCGCATCTGTGAAGATATCGATGAGTGTGTGCTCAGTTTGGGGGTTTGTGGTCCAGGCACCTGCTACAACACACTGGGAAACTACACTTGTGTCTGTCCACAAGATTACATTCAGGTGAATGGAGGACACAGATGCATGGATATGAGGAAAAGTTTGTGCTATCGCAGCTACAATGGCAGTGCCTGTGAACATCAGCTCAACTTTAACATCACACACAGATTGTGCTGCTGTTCCTACAATGTGGGAAAAGCCTGGAACAAGCCATGCCATGCCTGCCCGATACCTGGAACTGATGACTACAGCAGTCTTTGTGGCAGTGTGACTGGATTCTGGATCGACATTGCAACTGGAAAGCCAAAAGATATTGACGAATGTCATGAAATCCTGGGAGTTTGTGCTCATGGTGTGTGTATAAACCACATGGGCAGTTTCCACTGCGAGTGTCCCACTGGCTTTCTTTATAATGACCTGCTGCTCATCTGTGAAGACATTGATGAATGCAGCAGCAGAGAGCCTGTGTGTCAGAGAAATGCAGACTGCATCAACCGTCCAGGCGGTTATCAGTGTGAATGTTCTGATGGGTATATACTCACACCTAATGGAGACTGTAATGACCGTAATGAGTGCTTGGAGACACCCAGTGTGTGTCGTCATGGTGACTGTGTGGATATTCCAGGAGGGTATGAGTGCATGTGCCACACAGGATTTACAGTAACACCAAACCGCAGGATGTGTGTAGATATCAATGAATGTTCACATCAGCCATGTGGGAATGGCACGTGTAAAAACTCTGTTGGATCATTTAACTGTATCTGCCATCACGGATTTGAGCTCGCCACTAATAACTACTGTACAGATATCGATGAGTGTGCAGTTTTTCACTCTCAGCTCTGCAGGAATGGTCGGTGTGTCAATAATGTGGGCTCCTTCCAGTGTCTCTGTAGAGAAGGTTATGAACTCACTTTTGATGGCAAGACTTGTATGGATGTTAATGAGTGTACAATCATTCCTGGGATATGTGCTCCTGGAACTTGTCTGAATTTGGATGGTTCTTTCAGATGTGTCTGTCCTGATGGGTACATTGTCCAGAGTGATCACTGCGTAGATGTAAACGAGTGTTCGGAGGAGCCTGGGATCTGCACATATGGGACCTGCTTCAACAGTCTGGGCagctttgagtgtgtgtgtaaaccagGATTTGTGCTGTCAGAAGATAAGCGCAGATGTTATGACACCAGAGAGAGCTTCTGTTTCACACGCTTTGAGAACAGCAAGTGCTCTGTCCCGCAGGCGTTTAACACCACCAAAGCCAAGTGCTGCTGTAGTATCATGGCAAAGGAGGGCTGGGGCGACCCGTGTGAGCTGTGCCCTAAAGAACATGATGCAGCATTTCAGGATCTGTGCCCATTTGGTCATGGGATCATTCCTGGTGTTGGGGACACACGTGTAGATTTAAACGAGTGTGTGGAGAATCCAGAGATCTGTGTAAACGGACGCTGCATCAACATGGATGGTTCCTTTCGCTGTGAGTGTCCAGCAGGGTACACTCTTGACTACACAGGAACACATTGTGATGATATCGATGAATGTTCAGTGAGAAACCCATGTGGAAACGGCACGTGCTCCAATGTAATCGGGGcatttgagtgtttgtgtgaagaAGGATTTGAGCCTGGACCGATGATGAGCTGTGAAGATGTGAACGAATGTGGTCAGAATCCTCTGCTCTGTGCATTTCGCTGCATCAACACTTTCGGGAGTTATGAATGCAGCTGTCCATCTGGTTACACACTGAGAGAGGATGGACGCATGTGTCAAGATGTGGACGAGTGTGCAGAAGATCTTCATAACTGTGACTCCAGAGGAATGGAATGTAGCAACCTAATTGGCACATTTATGTGTGTTTGTCCGGCCGGTATGATCCGCAGGATGAGTGATGAGGCCTGTCaagATGAAAATGAATGCTTGACTCAGCCTGGTGTTTGTGAAAATGGCCGTTGTGTGAACACTGTTGGCAGCTACACTTGTGAATGTGGTGTTGGGTTCAAAACGGACTcgtcagccacacaatgtcttgATTACAGGAAAGGCTTCTGTTTCACTGAAGTTCTGCACACCATGTGTCAGATGTCGTCCAGCAGTCGTGTTCCTGTCAGCAGGTCTCAGTGCTGCTGTAATGGAGGTCATGGGTGGGGGGATCAGTGTGAGCTCTGCCCTCTGCCTGCCACTGCCAACTACAAAAAACTCTGTCCATATGGTCATGGATACGCCATAGACGGAACAGATATAGATGAGTGTAAACTAATTCCAGATGTCTGTGCCAATGGCGCTTGTATCAACATGATGGGCTCTTACAGATGCCACTGCAAACCAGGATACATAGCATCTACTGCAGGAACCGCATGTGTTGATGTCGATGAATGTGGTATGTCTCCAAAACCCTGTAACTTCATATGTAAGAACACCGAGGGCAGCTATGCATGTTCCTGTCCCCGTGGTTACACTCTGCAGAATGACAACAGGTCATGCAAAGATGTGGATGAATGTCAGAGCAGACGACACAACTGCCAGTTCTCGTGCATGAACACCATCGGTGGATTCACATGCAAGTGTCCAGCAGGTTTCAGCCAGCATCACAGAGCTTATATTGATGAATGTTTGTCAGACCTAACACCGTGTGGCCTGCAAGGAGCATGTCAGAATTCAGTGGgaagcttcagctgtgagtgtccCCAGGGCTTCAGTCTGGACTCTCTCGGCCACAACTGTGATGATGTAGATGAGTGTGCACGGGATCACAGGTGTCAGTTCGGTTGTCAGAATGTTGCTGGAGGTTTTCGCTGCAGCTGTCCACAGGGTTACACACAACACCAGCAGTGGAACCAGTGTGTGGATGACAATGAGTGCTTGAACGCAGACAACTGTGGTTCAGCTTCCTGTTTCAACACTTTGGGCAGTTTCAAGTGTGGCTGCCCATCTGGCTTCACCTTTGATCCTGCATCTACTAGCTGTGAGGATGTAGACGAGTGCGGGTCCTTCATGAACCCCTGCAGATACGGCTGCTCTAACACACAGGGTGGATTTGCGTGCGGGTGCCCAGCTGGTTATTACAGAGCAGGACAGGGCAGGAacctaatctgtgctgattggaccgatgacaatCCGTTGCGATTGGTTGTCGCCATTTTGAAAAAACTGCGTCCAGCGCTAGACAGAGTGAAATGTTCATCATGGCTtctcaacaatattgaagtagtcagagtgcagagtgtatgtgtgagcatacctgccaacactgtTGTTTTTCCCGAGAGTCTCCCGCATTTCAGACCTATCTCCCACCACCTTCCCATTGTGTTGTTTATCCCGGAAAATTCCGGTAATTTCATAGATGTAGTGGAAGTGGAttgcgagctcacaaacgcatttaaatccgtaaacaaagcagcacgcgtcaccTTTTTAACGTGGCATTAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090112-4 Predicted to enable calcium ion binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Human ortholog(s) of this gene implicated in congenital contractural arachnodactyly and scoliosis. Orthologous to human FBN2 (fibrillin 2).

Ensembl:

ensembl_id ENSDART00000073604

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006015 lncRNA downstream 349822 15937066 ~ 15964029 (-) False XLOC_002668
TCONS_00006017 lncRNA downstream 349822 15938913 ~ 15964029 (-) False XLOC_002668
TCONS_00005754 lncRNA downstream 349865 15937066 ~ 15963986 (-) False XLOC_002668
TCONS_00005757 lncRNA upstream 532009 17006225 ~ 17010898 (-) True XLOC_002673
TCONS_00006018 lncRNA upstream 542583 17016799 ~ 17019170 (-) False XLOC_002674
TCONS_00006019 lncRNA upstream 542583 17016799 ~ 17019175 (-) False XLOC_002674
TCONS_00006020 lncRNA upstream 542583 17016799 ~ 17027111 (-) True XLOC_002674
TCONS_00004976 lncRNA upstream 603388 17077604 ~ 17083131 (-) True XLOC_002675
TCONS_00004966 mRNA downstream 246657 16061655 ~ 16067194 (-) False XLOC_002670
TCONS_00004968 mRNA downstream 248666 16062144 ~ 16065185 (-) True XLOC_002670
TCONS_00004967 mRNA downstream 251286 16062144 ~ 16062565 (-) False XLOC_002670
TCONS_00004965 mRNA downstream 285769 16006905 ~ 16028082 (-) True XLOC_002669
TCONS_00004963 mRNA downstream 349948 15895988 ~ 15963903 (-) False XLOC_002668
TCONS_00004973 mRNA upstream 383313 16857529 ~ 16868211 (-) True XLOC_002672
TCONS_00004974 mRNA upstream 602961 17077177 ~ 17083180 (-) False XLOC_002675
TCONS_00004977 mRNA upstream 628686 17102902 ~ 17103651 (-) True XLOC_002677
TCONS_00004979 mRNA upstream 661415 17135631 ~ 17159761 (-) False XLOC_002679
TCONS_00004981 mRNA upstream 691819 17166035 ~ 17170086 (-) True XLOC_002680
TCONS_00004954 other downstream 694836 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004948 other downstream 973519 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004937 other downstream 1373505 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 1581452 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 1825697 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004975 other upstream 603217 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 630082 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 671603 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004991 other upstream 868149 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004997 other upstream 1019265 17493481 ~ 17501404 (-) True XLOC_002687

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU480224 True 688 TUCP 0.47 3 CI01000304 558092 ~ 564451 (+)