XLOC_002669 (aldh7a1)


Basic Information

Item Value
gene id XLOC_002669
gene name aldh7a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 16006905 ~ 16028082 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004965
GGGGTGAGTCGCAGTTTGACCAATAAGAATTCCCGTATACACGTGATCGCGGACGTACACGAGTGTAGCTCTTATCCACTGTTCCTCGGTTCATGATGCAGCGCGTGCTGACGCTGAGACTTGCGCGACTTTTTACTCAGAGGCATAAACTGTTGCCGAGTGTCCGAACCGCAGCACCGAATATGTCGACTCTGCTTATTAACCAACCAGAGTACAACTGGTTGAAAGAGTTAGGACTTAAAGAGGACAATGACGGTGTTTACAACGGTTCTTGGGGAGGACAGGGAGAGGTGGTCACTTCATATTGTCCAGCAAACAATGAGCCCATTGCCAGAGTGCGTCAgGCAACCATAGCAGAATATGAGGAAACCATACAGAAAGCACTGGACGCATGGAAAGTGTGGGCAGATGTACCTGCTCCAAAGAGAGGGGAAATTGTTCGACAGATTGGAGAGGCTTTAAGGAGGAAGATCAAAGCTCTCGGCAGCTTAGTGTCTCTAGAGATGGGCAAGATCTATGTGGAGGGTGTTGGTGAGGTGCAGGAGTATGTGGATGTGTGTGACTATGCTGTAGGACTGTCCCGTATGATTGGAGGTCCCATTTTGCCATCTGAAAGGCCAGGTCATGTGCTGATCGAGCAGTGGAATCCTGTTGGCTTGGTAGGAATCATCACAGCCTTTAACTTTCCTGTGGCTGTATATGGCTGGAACAATGCCATTGCTCTCATCTGTGGAAATGCCTGTCTTTGGAAAGGAGCTCCGACCACACCCCTTACAAGTGTTGCGGTTACCAAGATTGTAGCTGAAGTTTTGGAGCAGAATCATCTTCCTGGTGCAATCTGTTCTATGACATGTGGTGGCGCTGACATTGGCATGGCCATGGCTAAAGACGAGCGAGTGGGTCTTCTGTCCTTCACGGGTAGCACTCATGTGGGCAAACAAGTGGCAATGATGGTACAAGAACGGTTTGGTCGTCAGCTACTGGAGTTAGGAGGAAATAACGCCATCATAGTATTTGAGGATGCTGATCTTAGCTTGGTTGTACCGTCTGCTGTCTTTGCATCTGTGGGAACGGCTGGTCAGCGATGTACTACTACCAGACGACTGATGCTGCATGAAAGCATACATGATGAGGTTGTGGAGAGAATCGCTAAAGCTTACAAGCAGATTCGCATTGGTGACCCCTGGGACCCAAACACTCTTTATGGACCTCTGCACACCAAACAGGCTGTTCAGCAGTATCTGGCAGCCATAGAGCAGGCAAAACAGCAGGGTGGGACTCTTGTGTGTGGAGGAAAGatcaTGGATCGGCCGGGTAACTATGTGGAACCCACTATTATCACTGGACTACCGCACAATGCTTCTATAGTTCACACTGAGACCTTTGTGCCCATCCTTTATGTGCTGAAATTTAAGACAGAGGAAGAGGCATTTTCCTGGAATAACGAAGTTAAACAAGGGCTCTCCAGCAGTATCTTTACTAAAGACATGGGAAGAGTGTTCCGCTGGTTAGGTCCTAAAGGCTCCGACTGTGGCATTGTGAACGTTAACATTCCTACTAGCGGTGCTGAGATTGGAGGAGCGTTTGGAGGTGAGAAACACACAGGAGGTGGGCGCGAGTCGGGCAGCGATTCTTGGAAGCAGTACATGAGAAGGTCCACATGCACCATCAACTACAGCAAAGATCTGCCATTGGCCCAGGGGATCAAGTTTGAATGAATCATGATGTTGCCTAGTTAGTGGTGTAAAATAGCATTCATGATAGACACAACCCTGTGTTCATGTTTGTTTCATATAAATCTGTTTGTACTCCCACAGTCCACTGATCATTGCAACCCTTGTTTTGTAGCACTTAATGCTTGAAGATTTGATGATGTTAATTAAACTATGAATTAATTAA

Function

symbol description
aldh7a1 Enables alpha-aminoadipate acetyltransferase activity. Acts upstream of or within camera-type eye development; cartilage development; and pectoral fin development. Is expressed in several structures, including alar plate midbrain region; fin bud; musculature system; nervous system; and pharyngeal arch. Used to study epilepsy and pyridoxine-dependent epilepsy. Human ortholog(s) of this gene implicated in pyridoxine-dependent epilepsy. Orthologous to human ALDH7A1 (aldehyde dehydrogenase 7 family member A1).

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0051216 cartilage development biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0033339 pectoral fin development biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00053 Ascorbate and aldarate metabolism
ko00620 Pyruvate metabolism
ko00071 Fatty acid degradation
ko00561 Glycerolipid metabolism
ko00260 Glycine, serine and threonine metabolism
ko00280 Valine, leucine and isoleucine degradation
ko00310 Lysine degradation
ko00330 Arginine and proline metabolism
ko00340 Histidine metabolism
ko00380 Tryptophan metabolism
ko00410 beta-Alanine metabolism

ZFIN:

id description
ZDB-GENE-030131-6129 Enables alpha-aminoadipate acetyltransferase activity. Acts upstream of or within camera-type eye development; cartilage development; and pectoral fin development. Is expressed in several structures, including alar plate midbrain region; fin bud; musculature system; nervous system; and pharyngeal arch. Used to study epilepsy and pyridoxine-dependent epilepsy. Human ortholog(s) of this gene implicated in pyridoxine-dependent epilepsy. Orthologous to human ALDH7A1 (aldehyde dehydrogenase 7 family member A1).

Ensembl:

ensembl_id ENSDARG00000018426

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004965 True 1899 mRNA 0.48 18 16006905 16028082

Neighbor

gene id symbol gene type direction distance location
XLOC_002668 pip5k1ba coding downstream 42876 15881309 ~ 15964029 (-)
XLOC_002667 tjp2a coding downstream 127336 15815865 ~ 15879569 (-)
XLOC_002666 NA coding downstream 282801 15716739 ~ 15724104 (-)
XLOC_002665 mamdc2b coding downstream 334043 15648857 ~ 15672862 (-)
XLOC_002664 smc5 coding downstream 361931 15617741 ~ 15644974 (-)
XLOC_002670 si:dkey-184a18.5 coding upstream 33573 16061655 ~ 16067194 (-)
XLOC_002671 fbn2a coding upstream 285769 16313851 ~ 16495597 (-)
XLOC_002672 stoml2 coding upstream 829447 16857529 ~ 16868211 (-)
XLOC_002673 NA coding upstream 978143 17006225 ~ 17010898 (-)
XLOC_002674 NA coding upstream 988717 17016799 ~ 17027111 (-)
XLOC_002660 CT027832.1 non-coding downstream 920608 15082410 ~ 15086297 (-)
XLOC_002656 NA non-coding downstream 964157 15031006 ~ 15042748 (-)
XLOC_002657 NA non-coding downstream 971945 15032972 ~ 15034960 (-)
XLOC_002653 CT027820.1 non-coding downstream 1274506 14732283 ~ 14732399 (-)
XLOC_002676 NA non-coding upstream 1057442 17085524 ~ 17088911 (-)
XLOC_002678 BX324123.4 non-coding upstream 1076216 17104298 ~ 17132910 (-)
XLOC_002684 FP091248.1 non-coding upstream 1314283 17342365 ~ 17342481 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_00167148_00268194 ALDH7A1 coding CI01000304 null 167148 ~ 268194 (-)