RNA id: TCONS_00004993


Basic Information

Item Value
RNA id TCONS_00004993
length 2250
RNA type mRNA
GC content 0.46
exon number 18
gene id XLOC_002686
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17460358 ~ 17484764 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCGCGCGGCAGCTAGTTCGCGTGCTCACCACATACGCCCAAACTACGTACACAGGGCTCCTGTTTACCAGCCAAACCCCAGGAAAATTCACTCTGGTGATGTCAACAACATGGCACAATTTAAAGCGCAAAGTGGAGTTTCGTGACCACTTTAGATTGTGTTGATATTTGGGCAGCGGGAGCGAGCGGACGCACCGGGCACACGCGATGGAGCCGCGCATCAACAAAAAAGAGCTCCAGCACAGGGTGTTTGTGAACCGGAGTCTGACGCTTGAAAACATCAAGTGCTATGGCTTCGACATGGATTACACTCTGGCAGTTTATAAATCTCCAGAGTATGAGAGTCTGGGCTTTGAGCTGCTCAGGGACAGGCTTGTGTCCATTGGATATCCGCACGAGCTTCTGGGATATACATACGACTCTACTTTCCCCACACGAGGTCTGGTCTATGACACCACATACGGTAACCTGTTGAAAATAGACTCCAATGGAAACATTCTGGTCTGCACTCACGGCTTCGAGTACCTGAGAGGtgaaCAGGTGGATGAGTATTATCCAAACAAGTTCATCCAGAGAGACGACACTGACCGATTTTACGTCCTCAATACACTCTTCAACCTCTCAGAGACCTATCTTTACGCCTGCCTGGTTGACTTCTACACCAAAAGCACCAGATACAAGAATTGGCCGAAGGGGTTCAAACATGGTGACTTGTTCATGTCACACAGAAGCATGTTTCAGGACGTGAGGGACGCAATGGATCATCTTCACGACACTGGGACACTGAAGGAACGGACTCTGAAAAACCTGGACAAGTACGTCATTAAAGATCCTCGTATTCCTGTGTTACTGAGCCGCATCAAAGAGGTCGCTAAAGTGTTCCTGGCCACCAACAGCGACTTCAATTACACCGAGGCTATCATGAAATACTTACTGGATGCGGCGACAAGCTCTAAGGGCATGAAAAAGTCATGGCGCTCTTACTTTGACCTGGTGGTTGTGGATACGAGGAAGCCCTTGTTCTTCGCTGGAGGGACAGTTTTACGCCAAGTGGACACAGACACTGGGAAGTTGCGTATCGGCACGTACACCGGAGACCTCCAGCATGGGACGGTGTATTCTGGAGGATCTTCTGATCTAGTCTGTGACTTGCTGGATGTGAAGGGCAAAGACATCCTCTATGTGGGCGATCACATTTTTGGGGACATCCTGAAGTCCAAGAAGCGACAGGGCTGGAAGACGTTCCTTGTGGTTCCTGAGCTTGTGAAGGAACTGCATGTGTGGGCAGACAAATCCAGTATGTTTGAGGAGCTGAAACACCTCGACATCTTCCTTGCAGAGTTGTATCAGCATTTGGACAGTGGAAGTCAAGAGTGTCCAGATATCAGTGCGATCCAGACCAGGATAAAGATGGTGACGTACGGCATGGATCTGTGTTATGGGAAGATGGGCAGTTTGTTGCGCTGTGGCTCTACTAAAACACTGTTCGCCAGTCAGTTACTGCGGTATGCAGACATTTACTCAACCACCTGCCTTAACCTGCTTAACTACCCCTTCAGCTTCCTCTTCAGAGCCCCGCTCGTCCTGTTGCCACATGAGGCCGCTGTGGAGACTCAGAATAAAGAGCAGATGGCAGAGCTGTCAGAGCACATGCGCAGAACCAGCCTCAAGCAGCGTCAGTGTGAGTGTGAGGATGGAGATTGTGGACAAGATGACAACTGTGCCGCCAGAAACAGCGCTTCCACTTCAACTTCAGACAAATAGACATTTTCAGTTTGTTTACTGCTGTAAATAggcctatgatttttttttaacttgcataTGTTTTACCTTCACACGTTTCCATTGCTGTGTGTTGCTGTTCCATAGTTCCGCTCGGATATGTTTCCACTTCCGGCAGAAAGTAAACGGAATTAATTTGCCAAGTTTGCGATGTCTTATTGAGTTAACAGCTGTTATTTGTAAAGCAGGTATAAATCAGTATTTAAGCATTTTGTAAAACTTTTGTATTCTGTAGATTTAAATATGATATTCAGCCTTTTGTATGACAGTCACCATTAATGCATGAAAACTGGACAAGAACAATCTGATTTTGAAGTTTCATTAGAAAAGTTCGTTTATATCTCTATTTAACTATTTACATCAATACAGGGGTTGACATGAAGACTATAAAATGTTTCTACTCCTGTGAATGCTTTGTTTACtatttttcataatattatcGAAATTACgattaaagtgtttatttt

Function

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0046872 metal ion binding molecular_function
GO:0008253 5'-nucleotidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031006-8 Predicted to enable 5'-nucleotidase activity. Acts upstream of or within cellular response to xenobiotic stimulus. Is expressed in blood; eye; tail bud; ventral mesoderm; and yolk syncytial layer. Orthologous to human NT5DC4 (5'-nucleotidase domain containing 4).

Ensembl:

ensembl_id ENSDART00000007961

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006025 lncRNA downstream 17940 17437490 ~ 17442421 (-) False XLOC_002685
TCONS_00006024 lncRNA downstream 17940 17437490 ~ 17442421 (-) True XLOC_002685
TCONS_00006023 lncRNA downstream 18379 17437490 ~ 17441982 (-) False XLOC_002685
TCONS_00006022 lncRNA downstream 19695 17437490 ~ 17440666 (-) False XLOC_002685
TCONS_00004986 lncRNA downstream 280214 17179372 ~ 17180147 (-) False XLOC_002681
TCONS_00006026 lncRNA upstream 25216 17509980 ~ 17511199 (-) False XLOC_002688
TCONS_00006027 lncRNA upstream 97328 17582092 ~ 17587901 (-) True XLOC_002691
TCONS_00005011 lncRNA upstream 246529 17731293 ~ 17745344 (-) False XLOC_002694
TCONS_00005008 lncRNA upstream 246529 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00005006 lncRNA upstream 246529 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00004990 mRNA downstream 176306 17254502 ~ 17284055 (-) True XLOC_002683
TCONS_00004988 mRNA downstream 227989 17223681 ~ 17232372 (-) False XLOC_002682
TCONS_00004989 mRNA downstream 228444 17223985 ~ 17231917 (-) True XLOC_002682
TCONS_00004987 mRNA downstream 274547 17180012 ~ 17185814 (-) True XLOC_002681
TCONS_00004984 mRNA downstream 280946 17171964 ~ 17179415 (-) False XLOC_002681
TCONS_00004996 mRNA upstream 1181 17485945 ~ 17501528 (-) False XLOC_002687
TCONS_00005000 mRNA upstream 58512 17543276 ~ 17550239 (-) False XLOC_002690
TCONS_00005001 mRNA upstream 58916 17543680 ~ 17550931 (-) True XLOC_002690
TCONS_00005002 mRNA upstream 67969 17552733 ~ 17587832 (-) False XLOC_002691
TCONS_00005005 mRNA upstream 215252 17700016 ~ 17710637 (-) True XLOC_002693
TCONS_00004991 other downstream 117880 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004980 other downstream 303686 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004978 other downstream 327451 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004975 other downstream 376984 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004954 other downstream 1841346 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004997 other upstream 8717 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00004998 other upstream 25216 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004999 other upstream 48846 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00005003 other upstream 78211 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00005004 other upstream 142364 17627128 ~ 17627253 (-) True XLOC_002692

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_07183432_07198305.mRNA True 2443 mRNA 0.41 16 CI01000304 7182622 ~ 7198305 (-)
bowfin (Amia calva) AMCG00020891 True 2134 mRNA 0.55 18 CM030127.1 35909352 ~ 35926494 (+)