XLOC_002711 (zmat4b)


Basic Information

Item Value
gene id XLOC_002711
gene name zmat4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20270831 ~ 20339138 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005033
atacacacactgacacaGACAGCACGCGCAGCATCACTTCACACACTCAAGACTGTACGATCATCCATATCATCTGACGGACGGTCCTGGACACCTGTACCAGCGATACAGTCAGCAAATACAAATGAAGTCTACAGAAGTGGATCCAGGGTTATTCACTGACAGCTACTGCAAAGTGTGCAGCGCTCAGCTTATCTCTGAGTCACAGAGAGTCGCCCACTATGAGAGCCGAAAGCATGCAAACAAAGTTCGTCTGTATTACATGTTACACCCAGTGGATGGTGGATGTCCTGCAAAGAAGCTTCGATCAGACAATGGCAGTGCGGATGGAGACGTGGACAAGAACAAGTGCTGCACGCTCTGCAATATGTCTTTCACTTCAGCGGTGGTGGCCCAGTCACATTACCAGGGCAAGATCCATGCCAAGAGACTCAGGCTCCTGCTGGGGGAACCGGCTGCCATCATGTCTAAAGAAGTGACAGTCGAACCAGATCACATGATGGATGAAGATTGGAAGGATGGAAGTCCGTCTACAAATGGCAAACTCTCTCAGCGCTACTGCCAGATGTGTAAAGCCTGGTTCAACAACCCTGGCATGGCCAGGCAGCACTACAATGGCAAGAAGCACAAAAAAAATGGAGCTCAAGCAAACCTCCTCGCACAGCTGGGTAAAACTCTGGAGGACGGAGAAGAGATGAACGGCCTGAAGCGGAGTCACACATGTGAGGTCTGCAGTGTTACGCTCAACTCTGTGGCCCAATACCACGCACATCTGCAGGGATCCAAACACCAGAACAAGTAACTTGAAGAACAAATGAAGTCTGATGGGTCTGGTTTATTTCATCTCCAGTCCTGTGAGTTTTTGAGGATTGGTCTATGAATGTCCCGGCATCTTCTGCCTCTCTGAGACGTGACAGTGATATCGGGTCACATTCTCTTAATCCACTGTTTTTATGATATGGACACTATCAGTGCA
>TCONS_00005034
TGAATATGGAGCGCACTaaggacacatacacacactgacacaGACAGCACGCGCAGCATCACTTCACACACTCAAGACTGTACGATCATCCATATCATCTGACGGACGGTCCTGGACACCTGTACCAGCGATACAGTCAGCAAATACAAATGAAGTCTACAGAAGTGGATCCAGGGTTATTCACTGACAGCTACTGCAAAGTGTGCAGCGCTCAGCTTATCTCTGAGTCACAGAGAGTCGCCCACTATGAGAGCCGAAAGCATGCAAACAAAGTTCGTCTGTATTACATGTTACACCCAGTGGATGGTGGATGTCCTGCAAAGAAGCTTCGATCAGACAATGGCAGTGCGGATGGAGACGTGGACAAGAACAAGTGCTGCACGCTCTGCAATATGTCTTTCACTTCAGCGGTGGTGGCCCAGTCACATTACCAGGGCAAGATCCATGCCAAGAGACTCAGGCTCCTGCTGGGGGAACCGGCTGCCATCATGTCTAAAGAAGTGACAGTCGAACCAGATCACATGATGGATGAAGATTGGAAGGATGGAAGTCCGTCTACAAATGGCAAACTCTCTCAGCGCTACTGCCAGATGTGTAAAGCCTGGTTCAACAACCCTGGCATGGCCAGGCAGCACTACAATGGCAAGAAGCACAAAAAAAATGGAGCTCAAGCAAACCTCCTCGCACAGCTGGGTAAAACTCTGGAGGACGGAGAAGAGATGAACGGTATGATCTGAGAGGAACATGCAAAACAGCAAAAGCATTTCTTTATCATTTGGCTCATGATGTTACAATCACATACAGCACACGTGTCAcactcagtttctggagggccacagctctgcacagttccaATCATAATTAAACAcgtctgatcaaactaattgaatttagttagtgtgatatccagaaaggcaattgcagattaggaagtgtagtggagactaaatagttgagtttttagtcgtttcttgaaaatagcgagtgactctgctgttctgatgcagttagggagttcattccaccaactggg

Function

symbol description
zmat4b Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleus. Orthologous to human ZMAT4 (zinc finger matrin-type 4).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-68 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleus. Orthologous to human ZMAT4 (zinc finger matrin-type 4).

Ensembl:

ensembl_id ENSDARG00000061419

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005033 False 976 mRNA 0.49 7 20270831 20339113
TCONS_00005034 True 1033 mRNA 0.47 5 20286772 20339138

Neighbor

gene id symbol gene type direction distance location
XLOC_002710 NA coding downstream 33860 20234014 ~ 20236971 (-)
XLOC_002709 htr7b coding downstream 95713 20158838 ~ 20175118 (-)
XLOC_002708 CR450836.1 coding downstream 119503 20143797 ~ 20151328 (-)
XLOC_002707 pbdc1 coding downstream 164819 20103067 ~ 20106012 (-)
XLOC_002706 NA coding downstream 205682 20033900 ~ 20065149 (-)
XLOC_002712 sfrp1b coding upstream 12275 20351413 ~ 20357013 (-)
XLOC_002713 loxl2a coding upstream 68750 20407888 ~ 20445549 (-)
XLOC_002714 NA coding upstream 109501 20448639 ~ 20456007 (-)
XLOC_002715 tacc1 coding upstream 121413 20460551 ~ 20481763 (-)
XLOC_002716 BX294119.1 coding upstream 144676 20483814 ~ 20483930 (-)
XLOC_002705 NA non-coding downstream 274100 19931298 ~ 19996731 (-)
XLOC_002703 NA non-coding downstream 749127 19518885 ~ 19521704 (-)
XLOC_002701 NA non-coding downstream 1178225 19088996 ~ 19092606 (-)
XLOC_002720 NA non-coding upstream 277638 20616776 ~ 20618813 (-)
XLOC_002724 NA non-coding upstream 503780 20842918 ~ 20888760 (-)
XLOC_002725 BX004800.2 non-coding upstream 569304 20908442 ~ 20908556 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021034 NA coding CM030127.1 CM030127.1 42625384 ~ 42919615 (+)