XLOC_002706


Basic Information

Item Value
gene id XLOC_002706
gene name NA
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20033900 ~ 20065149 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005027
CACAAAGGGGCACTTTAGACACATGACCAAAACATAAAGAGGCCTAAACATGATTATTTCCAACTGGCCAGATTCCTGACAGCAATTCTACACAGAGAAACAGAATTAAGGTTACAAAAGTATACATATAACGCACAATTTGATATGCACAAACACTCTCAGTGTGTTAAATTTTAGATCCTATCCACTGAAAAGGATGCAATTCGTCAGATCATGTTAATCTAATTTTCACTGATATGCTGAACACGGCTTCGCACAGCATTCACTGTGACTAAAGGTAAATTTCTTAAGTAACCCTACAAATCTGTGATTCTGATGTGATGCTGTAGCAGGATGTTGAATAGATTCAAACGTTTCACATTTGCAGGGTCTTCAGTTCAGACCTAAATAGTGTCAAACAGGAAGAATCTTAAAAGAAGGAAACCAACgccaccacatacacacacaaacacacacacacacacacccactcatCTGACTTCTCCAAGAGACAGATTTAGACTTCATCTTAGACAGGAAGAATGGCTGACAATATACCTAAGGTCAGTCCGCTATTCACAGCCATGCATCTCATAGTCATTCAGACAGCCTGAAAGCAGAGTGCAATCAAAGGAGAGCGTAGAGAAAGAGAAAAACAAGGTAAAGAAAGGTCCAGCGGAGGAGCTATGGAGGAGGACATCAGGAGAAAAGGGATGCTTTACTTTCATCAGCAGCGCTTCGGCAAGAGATGGAGGAAAGTGTGGTGTGTGTTGGTGGCGGAGGGCAGGCGCAGTGTGGCTCGACTGGAGCTTTATGAGCACAAACACTCCTCCTTCAAACAGGGCACCAACAAACGAAAACCCGATTACAAACAGGTGATCCGCCTGCGAGAATGCATTCGCATTTCCAACTGCGACATGGCGGATTGTCCGAAAGACTGTGCCGCTTTTCTGCTCGAGACCTCTGACAAACTATACGTGTTTGCGGGTCTGCAGTCAGAGGTGAAGGACTGGATCAGCAGTCTCTGTCAGCAGGCCTTTCGTgatGTGGAGGCTGAGCAAAGATCACAGAGAGAAAGATGCGTCTGTTCTGAAGCTCCAGGCACTTCACATGTCAGAGAAATGCAGGACAATTCGCTCTATGATACAGCGGAGAACGTTCGAGATGTTCTGGTCATAGCAGTAAGCACAGAAGCTGCAGTTCGGTGTGGTCTGTATGGTGAATACGTCCTCACTCCTCTACAGGACTGTATAGTCCTGAAGGATCTGAAATCGAAGCAAGTGCTTTTTAAATGGCCGTACTGCTATGTAAGGAAGTTTGGACAAGATACGCTGTCTTTCTCCTTTGAGGCTGGCCGCAGATGTGAGTCCGGAGAAGGGAATTTCGAGTTTGCAACCCATCAGGGTGAAAGACTGTTCAATGCTGTCAGTGCAGCCATCCAGAATCTACCCAGACCATCCGAAACGAAACCTATCAGCCTTGACCAAGCAGAACAAACTAGAGCTCAAGAAACCACGGCTGGAACATACAACGACACCATAGGAAGTCAACCGTATGACTTTTTACTTGAGGGCAAGACGCAGAAACCATCAAAAATGCTCAACCCAGCTAGAAGGAGCTTTTCTTTGAACTCAATAGAGCCACAGATCGAAAGTCAAGAGATAAGCGACAACTTCAACCCTGAGAATCAGGAACCAGTCTACGCCAGAGTGTCAAAAACTCAGCAAAAAACCACTTCCCCGACCAACTCTCAAATGCACTGGCAAAACTTGAGAACAGCTCTCCAGCAGTCTGCGTTTCTAACAGATGCTTTTAAAAGCGACCCCGATGTTTTGCCTGATTTACCAATTTCTTGGGATGGCTATGAAGAGACAGAGATATCTGAAGATTGCATCGATTTTTTGGGTGACTCCATCCAGCAATTAGCAATTAATGACGCATTGCAGACCACCAGTGAAGAAGCAATTTATGCAGATCCACAGGATGTCCAGGACGACGCTGAGTGGGATGTCAGTGGTGTGTACGATGAACCAGAGGAGGTCATGATGGCTAATCAGAGAGCTCACGATGGGGCAAATCACCTAGCCGAGCAGGACAACTTCTACAGTCCTGACACGAGTGAAACACAGGCCACACACTCTCCCTCTGATCTAGCTGAAAATTCAGATGCCATGTTCTCAATTTATGACAATTTCAGATTGAAGGGGAAGCGAATGTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000116593

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005027 True 2198 mRNA 0.46 5 20033900 20065149

Neighbor

gene id symbol gene type direction distance location
XLOC_002705 NA coding downstream 37169 19931298 ~ 19996731 (-)
XLOC_002704 gfra2b coding downstream 232079 19723025 ~ 19801821 (-)
XLOC_002702 si:ch211-127i16.2 coding downstream 510148 19427474 ~ 19523752 (-)
XLOC_002703 NA coding downstream 512196 19518885 ~ 19521704 (-)
XLOC_002701 NA coding downstream 941294 19088996 ~ 19092606 (-)
XLOC_002707 pbdc1 coding upstream 37918 20103067 ~ 20106012 (-)
XLOC_002708 CR450836.1 coding upstream 78648 20143797 ~ 20151328 (-)
XLOC_002709 htr7b coding upstream 93689 20158838 ~ 20175118 (-)
XLOC_002710 NA coding upstream 168865 20234014 ~ 20236971 (-)
XLOC_002711 zmat4b coding upstream 205682 20270831 ~ 20339138 (-)
XLOC_002698 NA non-coding downstream 1746957 18284414 ~ 18286943 (-)
XLOC_002697 NA non-coding downstream 1750944 18274014 ~ 18282956 (-)
XLOC_002714 NA non-coding upstream 383490 20448639 ~ 20456007 (-)
XLOC_002716 BX294119.1 non-coding upstream 418665 20483814 ~ 20483930 (-)
XLOC_002720 NA non-coding upstream 551627 20616776 ~ 20618813 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_08510508_08532975 NA coding CI01000304 null 8510470 ~ 8533026 (-)